Literature DB >> 26524297

Sorting algorithms for single-particle imaging experiments at X-ray free-electron lasers.

S A Bobkov1, A B Teslyuk1, R P Kurta2, O Yu Gorobtsov1, O M Yefanov3, V A Ilyin1, R A Senin1, I A Vartanyants4.   

Abstract

Modern X-ray free-electron lasers (XFELs) operating at high repetition rates produce a tremendous amount of data. It is a great challenge to classify this information and reduce the initial data set to a manageable size for further analysis. Here an approach for classification of diffraction patterns measured in prototypical diffract-and-destroy single-particle imaging experiments at XFELs is presented. It is proposed that the data are classified on the basis of a set of parameters that take into account the underlying diffraction physics and specific relations between the real-space structure of a particle and its reciprocal-space intensity distribution. The approach is demonstrated by applying principal component analysis and support vector machine algorithms to the simulated and measured X-ray data sets.

Keywords:  coherent diffraction imaging; principal component analysis; support vector machine

Year:  2015        PMID: 26524297     DOI: 10.1107/S1600577515017348

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  6 in total

1.  Reconstruction from limited single-particle diffraction data via simultaneous determination of state, orientation, intensity, and phase.

Authors:  Jeffrey J Donatelli; James A Sethian; Peter H Zwart
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

2.  An advanced workflow for single-particle imaging with the limited data at an X-ray free-electron laser.

Authors:  Dameli Assalauova; Young Yong Kim; Sergey Bobkov; Ruslan Khubbutdinov; Max Rose; Roberto Alvarez; Jakob Andreasson; Eugeniu Balaur; Alice Contreras; Hasan DeMirci; Luca Gelisio; Janos Hajdu; Mark S Hunter; Ruslan P Kurta; Haoyuan Li; Matthew McFadden; Reza Nazari; Peter Schwander; Anton Teslyuk; Peter Walter; P Lourdu Xavier; Chun Hong Yoon; Sahba Zaare; Viacheslav A Ilyin; Richard A Kirian; Brenda G Hogue; Andrew Aquila; Ivan A Vartanyants
Journal:  IUCrJ       Date:  2020-10-15       Impact factor: 4.769

3.  Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source.

Authors:  Hemanth K N Reddy; Chun Hong Yoon; Andrew Aquila; Salah Awel; Kartik Ayyer; Anton Barty; Peter Berntsen; Johan Bielecki; Sergey Bobkov; Maximilian Bucher; Gabriella A Carini; Sebastian Carron; Henry Chapman; Benedikt Daurer; Hasan DeMirci; Tomas Ekeberg; Petra Fromme; Janos Hajdu; Max Felix Hanke; Philip Hart; Brenda G Hogue; Ahmad Hosseinizadeh; Yoonhee Kim; Richard A Kirian; Ruslan P Kurta; Daniel S D Larsson; N Duane Loh; Filipe R N C Maia; Adrian P Mancuso; Kerstin Mühlig; Anna Munke; Daewoong Nam; Carl Nettelblad; Abbas Ourmazd; Max Rose; Peter Schwander; Marvin Seibert; Jonas A Sellberg; Changyong Song; John C H Spence; Martin Svenda; Gijs Van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier
Journal:  Sci Data       Date:  2017-06-27       Impact factor: 6.444

4.  Selecting XFEL single-particle snapshots by geometric machine learning.

Authors:  Eduardo R Cruz-Chú; Ahmad Hosseinizadeh; Ghoncheh Mashayekhi; Russell Fung; Abbas Ourmazd; Peter Schwander
Journal:  Struct Dyn       Date:  2021-02-18       Impact factor: 2.920

5.  Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging.

Authors:  Yulong Zhuang; Salah Awel; Anton Barty; Richard Bean; Johan Bielecki; Martin Bergemann; Benedikt J Daurer; Tomas Ekeberg; Armando D Estillore; Hans Fangohr; Klaus Giewekemeyer; Mark S Hunter; Mikhail Karnevskiy; Richard A Kirian; Henry Kirkwood; Yoonhee Kim; Jayanath Koliyadu; Holger Lange; Romain Letrun; Jannik Lübke; Abhishek Mall; Thomas Michelat; Andrew J Morgan; Nils Roth; Amit K Samanta; Tokushi Sato; Zhou Shen; Marcin Sikorski; Florian Schulz; John C H Spence; Patrik Vagovic; Tamme Wollweber; Lena Worbs; P Lourdu Xavier; Oleksandr Yefanov; Filipe R N C Maia; Daniel A Horke; Jochen Küpper; N Duane Loh; Adrian P Mancuso; Henry N Chapman; Kartik Ayyer
Journal:  IUCrJ       Date:  2022-01-11       Impact factor: 4.769

6.  Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Authors:  Ruslan P Kurta; Jeffrey J Donatelli; Chun Hong Yoon; Peter Berntsen; Johan Bielecki; Benedikt J Daurer; Hasan DeMirci; Petra Fromme; Max Felix Hantke; Filipe R N C Maia; Anna Munke; Carl Nettelblad; Kanupriya Pande; Hemanth K N Reddy; Jonas A Sellberg; Raymond G Sierra; Martin Svenda; Gijs van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier; Andrew Aquila; Peter H Zwart; Adrian P Mancuso
Journal:  Phys Rev Lett       Date:  2017-10-12       Impact factor: 9.161

  6 in total

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