Literature DB >> 26517882

Probing the dynamic regulation of peripheral membrane proteins using hydrogen deuterium exchange-MS (HDX-MS).

Oscar Vadas1, John E Burke2.   

Abstract

Many cellular signalling events are controlled by the selective recruitment of protein complexes to membranes. Determining the molecular basis for how lipid signalling complexes are recruited, assembled and regulated on specific membrane compartments has remained challenging due to the difficulty of working in conditions mimicking native biological membrane environments. Enzyme recruitment to membranes is controlled by a variety of regulatory mechanisms, including binding to specific lipid species, protein-protein interactions, membrane curvature, as well as post-translational modifications. A powerful tool to study the regulation of membrane signalling enzymes and complexes is hydrogen deuterium exchange-MS (HDX-MS), a technique that allows for the interrogation of protein dynamics upon membrane binding and recruitment. This review will highlight the theory and development of HDX-MS and its application to examine the molecular basis of lipid signalling enzymes, specifically the regulation and activation of phosphoinositide 3-kinases (PI3Ks).
© 2015 Authors; published by Portland Press Limited.

Entities:  

Keywords:  catalytic subunit of PI3Kα (PIK3CA); hydrogen deuterium exchange–mass spectrometry (HDX–MS); membrane proteins; p85α regulatory subunit of class I PI3K (PIK3R1); phosphoinositide 3-kinases (PI3Ks); protein dynamics

Mesh:

Substances:

Year:  2015        PMID: 26517882     DOI: 10.1042/BST20150065

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  20 in total

1.  Probing Protein-Membrane Interactions and Dynamics Using Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS).

Authors:  Jordan T B Stariha; Reece M Hoffmann; David J Hamelin; John E Burke
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins.

Authors:  Joshua G Pemberton; Tamas Balla
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

Review 3.  Dynamic structural biology at the protein membrane interface.

Authors:  John E Burke
Journal:  J Biol Chem       Date:  2019-01-28       Impact factor: 5.157

4.  Ras Binder Induces a Modified Switch-II Pocket in GTP and GDP States.

Authors:  Daniel R Gentile; Manoj K Rathinaswamy; Meredith L Jenkins; Steven M Moss; Braden D Siempelkamp; Adam R Renslo; John E Burke; Kevan M Shokat
Journal:  Cell Chem Biol       Date:  2017-10-12       Impact factor: 8.116

5.  Integrating hydrogen-deuterium exchange mass spectrometry with molecular dynamics simulations to probe lipid-modulated conformational changes in membrane proteins.

Authors:  Chloe Martens; Mrinal Shekhar; Andy M Lau; Emad Tajkhorshid; Argyris Politis
Journal:  Nat Protoc       Date:  2019-10-11       Impact factor: 13.491

6.  Novel K-Ras G12C Switch-II Covalent Binders Destabilize Ras and Accelerate Nucleotide Exchange.

Authors:  Chimno I Nnadi; Meredith L Jenkins; Daniel R Gentile; Leslie A Bateman; Daniel Zaidman; Trent E Balius; Daniel K Nomura; John E Burke; Kevan M Shokat; Nir London
Journal:  J Chem Inf Model       Date:  2018-01-31       Impact factor: 4.956

7.  An intrinsic lipid-binding interface controls sphingosine kinase 1 function.

Authors:  Michael J Pulkoski-Gross; Meredith L Jenkins; Jean-Philip Truman; Mohamed F Salama; Christopher J Clarke; John E Burke; Yusuf A Hannun; Lina M Obeid
Journal:  J Lipid Res       Date:  2018-01-11       Impact factor: 5.922

Review 8.  Conformational insight into multi-protein signaling assemblies by hydrogen-deuterium exchange mass spectrometry.

Authors:  Rane A Harrison; John R Engen
Journal:  Curr Opin Struct Biol       Date:  2016-08-20       Impact factor: 6.809

9.  Conformational disruption of PI3Kδ regulation by immunodeficiency mutations in PIK3CD and PIK3R1.

Authors:  Gillian L Dornan; Braden D Siempelkamp; Meredith L Jenkins; Oscar Vadas; Carrie L Lucas; John E Burke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

10.  Molecular mechanism of activation of class IA phosphoinositide 3-kinases (PI3Ks) by membrane-localized HRas.

Authors:  Braden D Siempelkamp; Manoj K Rathinaswamy; Meredith L Jenkins; John E Burke
Journal:  J Biol Chem       Date:  2017-05-17       Impact factor: 5.157

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