Literature DB >> 28515318

Molecular mechanism of activation of class IA phosphoinositide 3-kinases (PI3Ks) by membrane-localized HRas.

Braden D Siempelkamp1, Manoj K Rathinaswamy1, Meredith L Jenkins1, John E Burke2.   

Abstract

Class IA PI3Ks are involved in the generation of the key lipid signaling molecule phosphatidylinositol 3,4,5-trisphosphate (PIP3), and inappropriate activation of this pathway is implicated in a multitude of human diseases, including cancer, inflammation, and primary immunodeficiencies. Class IA PI3Ks are activated downstream of the Ras superfamily of GTPases, and Ras-PI3K interaction plays a key role in promoting tumor formation and maintenance in Ras-driven tumors. Investigating the detailed molecular events in the Ras-PI3K interaction has been challenging because it occurs on a membrane surface. Here, using maleimide-functionalized lipid vesicles, we successfully generated membrane-resident HRas and evaluated its effect on PI3K signaling in lipid kinase assays and through analysis with hydrogen-deuterium exchange MS. We screened all class IA PI3K isoforms and found that HRas activates both p110α and p110δ isoforms but does not activate p110β. The p110α and p110δ activation by Ras was synergistic with activation by a soluble phosphopeptide derived from receptor tyrosine kinases. Hydrogen-deuterium exchange MS revealed that membrane-resident HRas, but not soluble HRas, enhances conformational changes associated with membrane binding by increasing membrane recruitment of both p110α and p110δ. Together, these results afford detailed molecular insight into the Ras-PI3K signaling complex, provide a framework for screening Ras inhibitors, and shed light on the isoform specificity of Ras-PI3K interactions in a native membrane context.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Ras protein; hydrogen exchange mass spectrometry; lipid signaling; lipid–protein interaction; phosphatidylinositide 3-kinase (PI 3-kinase); phosphoinositide

Mesh:

Substances:

Year:  2017        PMID: 28515318      PMCID: PMC5519374          DOI: 10.1074/jbc.M117.789263

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  39 in total

1.  Binding of ras to phosphoinositide 3-kinase p110alpha is required for ras-driven tumorigenesis in mice.

Authors:  Surbhi Gupta; Antoine R Ramjaun; Paula Haiko; Yihua Wang; Patricia H Warne; Barbara Nicke; Emma Nye; Gordon Stamp; Kari Alitalo; Julian Downward
Journal:  Cell       Date:  2007-06-01       Impact factor: 41.582

2.  Roles of non-catalytic subunits in gbetagamma-induced activation of class I phosphoinositide 3-kinase isoforms beta and gamma.

Authors:  U Maier; A Babich; B Nürnberg
Journal:  J Biol Chem       Date:  1999-10-08       Impact factor: 5.157

3.  A phospholipid substrate molecule residing in the membrane surface mediates opening of the lid region in group IVA cytosolic phospholipase A2.

Authors:  John E Burke; Yuan-Hao Hsu; Raymond A Deems; Sheng Li; Virgil L Woods; Edward A Dennis
Journal:  J Biol Chem       Date:  2008-08-27       Impact factor: 5.157

Review 4.  Structural basis for activation and inhibition of class I phosphoinositide 3-kinases.

Authors:  Oscar Vadas; John E Burke; Xuxiao Zhang; Alex Berndt; Roger L Williams
Journal:  Sci Signal       Date:  2011-10-18       Impact factor: 8.192

5.  A pharmacological map of the PI3-K family defines a role for p110alpha in insulin signaling.

Authors:  Zachary A Knight; Beatriz Gonzalez; Morri E Feldman; Eli R Zunder; David D Goldenberg; Olusegun Williams; Robbie Loewith; David Stokoe; Andras Balla; Balazs Toth; Tamas Balla; William A Weiss; Roger L Williams; Kevan M Shokat
Journal:  Cell       Date:  2006-04-27       Impact factor: 41.582

Review 6.  Synergy in activating class I PI3Ks.

Authors:  John E Burke; Roger L Williams
Journal:  Trends Biochem Sci       Date:  2015-01-05       Impact factor: 13.807

7.  Oncogenic mutations mimic and enhance dynamic events in the natural activation of phosphoinositide 3-kinase p110α (PIK3CA).

Authors:  John E Burke; Olga Perisic; Glenn R Masson; Oscar Vadas; Roger L Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

8.  A comprehensive survey of Ras mutations in cancer.

Authors:  Ian A Prior; Paul D Lewis; Carla Mattos
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

9.  Membrane-dependent signal integration by the Ras activator Son of sevenless.

Authors:  Jodi Gureasko; William J Galush; Sean Boykevisch; Holger Sondermann; Dafna Bar-Sagi; Jay T Groves; John Kuriyan
Journal:  Nat Struct Mol Biol       Date:  2008-05-04       Impact factor: 15.369

10.  Molecular determinants of PI3Kγ-mediated activation downstream of G-protein-coupled receptors (GPCRs).

Authors:  Oscar Vadas; Hashem A Dbouk; Aliaksei Shymanets; Olga Perisic; John E Burke; Widian F Abi Saab; Bassem D Khalil; Christian Harteneck; Anne R Bresnick; Bernd Nürnberg; Jonathan M Backer; Roger L Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

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  22 in total

1.  Probing Protein-Membrane Interactions and Dynamics Using Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS).

Authors:  Jordan T B Stariha; Reece M Hoffmann; David J Hamelin; John E Burke
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Dynamic structural biology at the protein membrane interface.

Authors:  John E Burke
Journal:  J Biol Chem       Date:  2019-01-28       Impact factor: 5.157

3.  Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to α-l-fucosidases from GH29.

Authors:  Chelsea Vickers; Feng Liu; Kento Abe; Orly Salama-Alber; Meredith Jenkins; Christopher M K Springate; John E Burke; Stephen G Withers; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2018-10-03       Impact factor: 5.157

Review 4.  Oncogenic Ras Isoforms Signaling Specificity at the Membrane.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Cancer Res       Date:  2017-12-22       Impact factor: 12.701

5.  Ras Binder Induces a Modified Switch-II Pocket in GTP and GDP States.

Authors:  Daniel R Gentile; Manoj K Rathinaswamy; Meredith L Jenkins; Steven M Moss; Braden D Siempelkamp; Adam R Renslo; John E Burke; Kevan M Shokat
Journal:  Cell Chem Biol       Date:  2017-10-12       Impact factor: 8.116

6.  Plant miR171 modulates mTOR pathway in HEK293 cells by targeting GNA12.

Authors:  Angelo Gismondi; Valentina Nanni; Valentina Monteleone; Claudia Colao; Gabriele Di Marco; Antonella Canini
Journal:  Mol Biol Rep       Date:  2021-01-01       Impact factor: 2.316

7.  Novel K-Ras G12C Switch-II Covalent Binders Destabilize Ras and Accelerate Nucleotide Exchange.

Authors:  Chimno I Nnadi; Meredith L Jenkins; Daniel R Gentile; Leslie A Bateman; Daniel Zaidman; Trent E Balius; Daniel K Nomura; John E Burke; Kevan M Shokat; Nir London
Journal:  J Chem Inf Model       Date:  2018-01-31       Impact factor: 4.956

8.  An intrinsic lipid-binding interface controls sphingosine kinase 1 function.

Authors:  Michael J Pulkoski-Gross; Meredith L Jenkins; Jean-Philip Truman; Mohamed F Salama; Christopher J Clarke; John E Burke; Yusuf A Hannun; Lina M Obeid
Journal:  J Lipid Res       Date:  2018-01-11       Impact factor: 5.922

9.  Phosphorylated Calmodulin Promotes PI3K Activation by Binding to the SH2 Domains.

Authors:  Mingzhen Zhang; Hyunbum Jang; Vadim Gaponenko; Ruth Nussinov
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

Review 10.  A regulatory role of membrane by direct modulation of the catalytic kinase domain.

Authors:  Priyanka Prakash
Journal:  Small GTPases       Date:  2020-07-14
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