| Literature DB >> 26509162 |
Noemy Starita1, Clorinda Annunziata1, Keith M Waddell2, Luigi Buonaguro1, Franco M Buonaguro1, Maria Lina Tornesello1.
Abstract
The incidence of squamous cell carcinoma of the conjunctiva is particularly high in sub-Saharan Africa with temporal trends similar to those of Kaposi sarcoma (KS). Human herpesvirus type 8 (HHV8), has not yet been investigated in conjunctiva tumors. In this study biopsies and PBMCs of conjunctiva neoplasia patients along with nonneoplastic conjunctiva tissues have been analyzed for HHV8 sequences by PCR targeting ORF26. All amplimers were subjected to nucleotide sequencing followed by phylogenetic analysis. HHV8 DNA has been identified in 12 out of 48 (25%) HIV-positive, and in 2 out of 24 (8.3%) HIV-negative conjunctiva neoplastic tissues and in 4 out of 33 (12.1%) PBMC samples from conjunctiva neoplasia diseased patients as well as in 4 out of 60 (6.7%) nontumor conjunctiva tissues. The viral load ranged from 1 to 400 copies/10(5) cells. Phylogenetic analysis showed that the majority of HHV8 ORF26 amplimers clustered with subtypes R (n = 11) and B2 (n = 6). This variant distribution is in agreement with that of HHV8 variants previously identified in Ugandan KS cases. The presence of HHV8 in conjunctiva tumors from HIV-positive patients warrants further studies to test whether HHV8 products released by infected cells may have paracrine effects on the growth of conjunctiva lesions.Entities:
Mesh:
Year: 2015 PMID: 26509162 PMCID: PMC4609772 DOI: 10.1155/2015/801353
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
PCR primer sequences used to amplify HHV8 ORF26 regions by standard PCR and real time PCR.
| Method | Locus | Primer name | Sequences (5′-3′) | Nucleotide position | Size | Reference |
|---|---|---|---|---|---|---|
| PCR outer | ORF26-3′ | LGH2575-R | GTGCTTGACGATCTGTCC | 47,638–47,655 | 620 bp |
[ |
| LGH2574-L | CAGAAACAGGGCTAGGTAC | 48,239–48,257 | ||||
|
| ||||||
| PCR inner | ORF26-3′ | SJ-F | CTATCTTCAGAGTCTCAG | 47,844–47,861 | 402 bp | [ |
| SJ-R | TAGGTACACACAATTTTG | 48,228–48,245 | ||||
|
| ||||||
| PCR outer | ORF26-5′ | LGH1701R | GGATCCCTCTGACAACC | 47,292–47,309 | ||
| SJ-R2 | GCCAAGATTAAATATAGAACTGAG | 47,857–47,880 | 589 bp | [ | ||
|
| ||||||
| PCR inner | ORF26-5′ | LGH1701R | GGATCCCTCTGACAACC | 47,292–47,309 | ||
| SJ-R1 | AATATAGAACTGAGACTCTGAAG | 47,848–47,870 | 579 bp | [ | ||
|
| ||||||
| Real time PCR | ORF26-3′ | ORF26LR1F1 | GCAGTATCTATCCAAGTG | 47,220–47,237 | ||
| ORF26LR2R2 | ACAGATCGTCAAGCA | 47,639–47,653 | 434 bp | This study | ||
Nucleotide positions are given on the GenBank sequence number NC_009333.
Distribution of known variables between conjunctival neoplasia cases and controls.
| Conjunctiva | Conjunctiva |
| |
|---|---|---|---|
|
|
| ||
| Sex | 0.724 | ||
| M | 31 (43.1) | 24 (40.0) | |
| F | 41 (56.9) | 36 (60.0) | |
|
| |||
| Age | 0.584 | ||
| ≤30 years | 31 (43.1) | 23 (38.3) | |
| >30 years | 41 (56.9) | 37 (61.7) | |
|
| |||
| HHV8 PCR | 0.034 | ||
| Positive | 14 (19.4) | 4 (6.7) | |
| Negative | 58 (80.5) | 56 (93.3) | |
|
| |||
| HIV serology† | 0.004 | ||
| Positive | 48 (66.7) | 15 (38.5) | |
| Negative | 24 (33.3) | 24 (61.5) | |
Two pingueculae, 1 pterygium, and 1 papilloma of the conjunctiva were included in the control group.
†21 control subjects with undetermined HIV serology were not included.
Distribution of HHV8 in HIV-positive and HIV-negative conjunctival neoplasia samples and controls.
| HIV status | Conjunctiva | Conjunctiva |
|
|---|---|---|---|
|
|
| ||
| HIV positive | 0.347‡ | ||
| HHV8-Pos | 12 (25.0) | 2 (13.3) | |
| HHV8-Neg | 36 (75.0) | 13 (86.7) | |
|
| |||
| HIV negative | 1.000‡ | ||
| HHV8-Pos | 2 (8.3) | 1 (4.2) | |
| HHV8-Neg | 22 (91.7) | 23 (95.8) | |
Two pingueculae, 1 pterygium, and 1 papilloma of the conjunctiva were included in the control group.
†21 control subjects with undetermined HIV serology were not included.
‡Fisher's exact test, two-tailed.
Nucleotide changes identifying distinct subgroups of HHV8 genomes within the ORF26 gene locus. Dashes indicate identities to the prototype. Absence of genetic variations relative to the references is marked with dashes, whereas presence of variant nucleotides is indicated by the nucleotide corresponding letter. An empty space indicates sequence not available. ∧ indicates nucleotide insertion; δ indicates nucleotide deletion. The numbering system conforms to that used by Tornesello et al. [32].
| Sample | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | ORF26 | ||
| 7 | 9 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 4 | 5 | 5 | 5 | 5 | 5 | 7 | 7 | 7 | 7 | 8 | 8 | 8 | ||
| 3 | 8 | 3 | 5 | 8 | 2 | 3 | 3 | 4 | 5 | 7 | 0 | 9 | 4 | 6 | 6 | 6 | 9 | 1 | 2 | 5 | 9 | 0 | 1 | 2 | ||
| 3 | 1 | 2 | 5 | 6 | 2 | 2 | 9 | 1 | 8 | 7 | 6 | 0 | 5 | 2 | 8 | 9 | 4 | 7 | 3 | 4 | 5 | 2 | 6 | 5 | ||
|
| ||||||||||||||||||||||||||
| BCBLR | G | T | C | G | C | G | A | A | A | C | C | G | G | C | ∧ | G | G | G | C | C | C | G | G | T | G | A/C |
|
| ||||||||||||||||||||||||||
| HKS15 | C | — | — | T | — | — | C | — | — | — | — | T | — | 0 |
|
| T | T | — | — | — | — | — | — | R | |
| CIN3.110 | — | C | — | — | T | — | — | C | — | — | — | — | T | — | R | |||||||||||
| CIN3.179 | — | C | — | — | T | — | — | C | — | — | — | — | T | — | R | |||||||||||
| CIN2.136 | — | C | — | — | T | — | — | C | — | — | — | — | T | — | R | |||||||||||
| CIN2.169 | — | C | — | — | T | — | — | C | — | — | — | — | T | — | 0 |
|
| T | T | — | — | — | — | — | — | R |
| CIN1.173 | — | C | — | — | T | — | — | C | — | — | — | — | T | — | 0 |
|
| T | T | — | — | — | — | — | — | R |
|
| ||||||||||||||||||||||||||
| 431K | C | — | — | — | — | G | C | — | — | — | — | — | — | 0 | T | A | — | — | T | — | C | — | C | A | B1 | |
| SCC.193 | — | C | — | — | — | — | G | C | — | — | — | — | — | — | 0 | T | A | — | — | T | — | C | — | C | A | B1 |
|
| ||||||||||||||||||||||||||
| 021K | C | A | — | — | — | G | C | — | — | — | — | — | — | 0 | T | A | — | — | T | — | C | — | C | A | B2 | |
| SCC.108 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | 0 | T | A | — | — | T | — | C | — | C | A | B2 |
| SCC.144 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| SCC.218 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| CIN3.99 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| CIN3.167 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| CIN2.138 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| CIN2.143 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | 0 | T | A | — | — | T | — | C | — | C | A | B2 |
| CTR.142 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| CTR.143 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
| CTR.149 | — | C | A | — | — | — | G | C | — | — | — | — | — | — | B2 | |||||||||||
|
| ||||||||||||||||||||||||||
| HKS21 | C | A | T | — | — | G | C | — | — | — | — | — | 0 | — | — | — | — | — | — | — | — | — | — | J | ||
| SCC.142 | — | C | A | T | — | — | G | C | — | — | — | — | — | — | J | |||||||||||