Literature DB >> 26504222

Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics.

Rizal F Hariadi1, Erik Winfree2, Bernard Yurke3.   

Abstract

Quantifying the mechanical forces produced by fluid flows within the ocean is critical to understanding the ocean's environmental phenomena. Such forces may have been instrumental in the origin of life by driving a primitive form of self-replication through fragmentation. Among the intense sources of hydrodynamic shear encountered in the ocean are breaking waves and the bursting bubbles produced by such waves. On a microscopic scale, one expects the surface-tension-driven flows produced during bubble rupture to exhibit particularly high velocity gradients due to the small size scales and masses involved. However, little work has examined the strength of shear flow rates in commonly encountered ocean conditions. By using DNA nanotubes as a novel fluid flow sensor, we investigate the elongational rates generated in bursting films within aqueous bubble foams using both laboratory buffer and ocean water. To characterize the elongational rate distribution associated with a bursting bubble, we introduce the concept of a fragmentation volume and measure its form as a function of elongational flow rate. We find that substantial volumes experience surprisingly large flow rates: during the bursting of a bubble having an air volume of 10 mm(3), elongational rates at least as large as [Formula: see text] s(-1) are generated in a fragmentation volume of [Formula: see text] [Formula: see text]. The determination of the elongational strain rate distribution is essential for assessing how effectively fluid motion within bursting bubbles at the ocean surface can shear microscopic particles and microorganisms, and could have driven the self-replication of a protobiont.

Keywords:  DNA nanotechnology; hydrodynamics; polymer dynamics

Mesh:

Substances:

Year:  2015        PMID: 26504222      PMCID: PMC4653207          DOI: 10.1073/pnas.1424673112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Review 2.  Regeneration in the metazoans: why does it happen?

Authors:  A Sánchez Alvarado
Journal:  Bioessays       Date:  2000-06       Impact factor: 4.345

3.  Viability, strength, and fragmentation of Saccharopolyspora erythraea in submerged fermentation.

Authors:  S M Stocks; C R Thomas
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4.  Scale dependence of bubble creation mechanisms in breaking waves.

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Journal:  Nature       Date:  2002-08-22       Impact factor: 49.962

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Authors:  Ido Braslavsky; Benedict Hebert; Emil Kartalov; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

6.  Cell death in the thin films of bursting bubbles.

Authors:  R S Cherry; C T Hulle
Journal:  Biotechnol Prog       Date:  1992 Jan-Feb

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Journal:  Phys Rev Lett       Date:  2004-12-20       Impact factor: 9.161

8.  Bacterial diversity in the bacterioneuston (sea surface microlayer): the bacterioneuston through the looking glass.

Authors:  Mark P Franklin; Ian R McDonald; David G Bourne; Nicholas J P Owens; Robert C Upstill-Goddard; J Colin Murrell
Journal:  Environ Microbiol       Date:  2005-05       Impact factor: 5.491

9.  Salt dependence of the elasticity and overstretching transition of single DNA molecules.

Authors:  Jay R Wenner; Mark C Williams; Ioulia Rouzina; Victor A Bloomfield
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

10.  Mechanism of prion propagation: amyloid growth occurs by monomer addition.

Authors:  Sean R Collins; Adam Douglass; Ronald D Vale; Jonathan S Weissman
Journal:  PLoS Biol       Date:  2004-09-21       Impact factor: 8.029

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  3 in total

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Journal:  Biomicrofluidics       Date:  2022-07-28       Impact factor: 3.258

2.  T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures.

Authors:  Samuel W Schaffter; Leopold N Green; Joanna Schneider; Hari K K Subramanian; Rebecca Schulman; Elisa Franco
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

3.  Flowering in bursting bubbles with viscoelastic interfaces.

Authors:  Daniele Tammaro; Vinny Chandran Suja; Aadithya Kannan; Luigi Davide Gala; Ernesto Di Maio; Gerald G Fuller; Pier Luca Maffettone
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

  3 in total

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