Literature DB >> 15698032

Joining and scission in the self-assembly of nanotubes from DNA tiles.

Axel Ekani-Nkodo1, Ashish Kumar, Deborah Kuchnir Fygenson.   

Abstract

We present the first direct observations of tile-based DNA self-assembly in solution using fluorescent nanotubes composed of a single tile. The nanotubes reach tens of microns in length by end-to-end joining rather than by sequential addition of single tiles. Their exponential length distributions withstand dilution but decay via scission upon heating, with an energy barrier Esc approximately 180kBT. DNA nanotubes are thus uniquely accessible equilibrium polymers that enable new approaches to optimizing DNA-based programming and understanding the biologically programmed self-assembly of protein polymers.

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Year:  2004        PMID: 15698032     DOI: 10.1103/PhysRevLett.93.268301

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

1.  Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics.

Authors:  Rizal F Hariadi; Erik Winfree; Bernard Yurke
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

2.  Synthesis of crystals with a programmable kinetic barrier to nucleation.

Authors:  Rebecca Schulman; Erik Winfree
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-19       Impact factor: 11.205

3.  Self-assembling DNA nanotubes to connect molecular landmarks.

Authors:  Abdul M Mohammed; Petr Šulc; John Zenk; Rebecca Schulman
Journal:  Nat Nanotechnol       Date:  2016-12-19       Impact factor: 39.213

4.  String model for the dynamics of glass-forming liquids.

Authors:  Beatriz A Pazmiño Betancourt; Jack F Douglas; Francis W Starr
Journal:  J Chem Phys       Date:  2014-05-28       Impact factor: 3.488

5.  Engineering Circular Gliding of Actin Filaments Along Myosin-Patterned DNA Nanotube Rings To Study Long-Term Actin-Myosin Behaviors.

Authors:  Rizal F Hariadi; Abhinav J Appukutty; Sivaraj Sivaramakrishnan
Journal:  ACS Nano       Date:  2016-09-12       Impact factor: 15.881

6.  Self-assembly of multi-stranded RNA motifs into lattices and tubular structures.

Authors:  Jaimie Marie Stewart; Hari K K Subramanian; Elisa Franco
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

7.  Thermodynamics and kinetics of DNA nanotube polymerization from single-filament measurements.

Authors:  Rizal F Hariadi; Bernard Yurke; Erik Winfree
Journal:  Chem Sci       Date:  2015-02-20       Impact factor: 9.825

8.  Spontaneous Reorganization of DNA-Based Polymers in Higher Ordered Structures Fueled by RNA.

Authors:  Serena Gentile; Erica Del Grosso; Passa E Pungchai; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  J Am Chem Soc       Date:  2021-11-29       Impact factor: 15.419

9.  Dynamic self-assembly of compartmentalized DNA nanotubes.

Authors:  Siddharth Agarwal; Melissa A Klocke; Passa E Pungchai; Elisa Franco
Journal:  Nat Commun       Date:  2021-06-11       Impact factor: 14.919

10.  Feedback regulation of crystal growth by buffering monomer concentration.

Authors:  Samuel W Schaffter; Dominic Scalise; Terence M Murphy; Anusha Patel; Rebecca Schulman
Journal:  Nat Commun       Date:  2020-11-27       Impact factor: 14.919

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