Literature DB >> 12023240

Salt dependence of the elasticity and overstretching transition of single DNA molecules.

Jay R Wenner1, Mark C Williams, Ioulia Rouzina, Victor A Bloomfield.   

Abstract

As double-stranded DNA is stretched to its B-form contour length, models of polymer elasticity can describe the dramatic increase in measured force. When the molecule is stretched beyond this contour length, it shows a highly cooperative overstretching transition. We have measured the elasticity and overstretching transition as a function of monovalent salt concentration by stretching single DNA molecules in an optical tweezers apparatus. As the sodium ion concentration was decreased from 1000 to 2.57 mM, the persistence length of DNA increased from 46 to 59 nm, while the elastic stretch modulus remained approximately constant. These results are consistent with the model of Podgornik, et al. (2000, J. Chem. Phys. 113:9343-9350) using an effective DNA length per charge of 0.67 nm. As the monovalent salt concentration was decreased over the same range, the overstretching transition force decreased from 68 to 52 pN. This reduction in force is attributed to a decrease in the stability of the DNA double helix with decreasing salt concentration. Although, as was shown previously, the hydrogen bonds holding DNA strands in a helical conformation break as DNA is overstretched, these data indicate that both DNA strands remain close together during the transition.

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Year:  2002        PMID: 12023240      PMCID: PMC1302105          DOI: 10.1016/S0006-3495(02)75658-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

1.  Force-induced melting of the DNA double helix 1. Thermodynamic analysis.

Authors:  I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Force-induced melting of the DNA double helix. 2. Effect of solution conditions.

Authors:  I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

3.  Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Authors:  M C Williams; J R Wenner; I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

4.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

5.  On the factors controlling the reversibility of DNA denaturation.

Authors:  E P GEIDUSCHEK
Journal:  J Mol Biol       Date:  1962-06       Impact factor: 5.469

6.  Mechanical stability of single DNA molecules.

Authors:  H Clausen-Schaumann; M Rief; C Tolksdorf; H E Gaub
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

Review 7.  The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides.

Authors:  G S Manning
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

8.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

9.  Conformational transitions of duplex and triplex nucleic acid helices: thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients.

Authors:  J P Bond; C F Anderson; M T Record
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

10.  Increasing incidence of childhood celiac disease in Sicily: results of a multicenter study.

Authors:  G Magazzú; G Bottaro; F Cataldo; G Iacono; F Di Donato; R Patane; F Cavataio; I Maltese; C Romano; A Arco
Journal:  Acta Paediatr       Date:  1994-10       Impact factor: 2.299

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  105 in total

1.  Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-11

Review 2.  Stretching and imaging single DNA molecules and chromatin.

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Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

Review 3.  Mechanics and imaging of single DNA molecules.

Authors:  M Hegner; W Grange
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

4.  Self-assembly of DNA nanotubes with controllable diameters.

Authors:  Ofer I Wilner; Ron Orbach; Anja Henning; Carsten Teller; Omer Yehezkeli; Michael Mertig; Daniel Harries; Itamar Willner
Journal:  Nat Commun       Date:  2011-11-15       Impact factor: 14.919

5.  Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements.

Authors:  Xinghua Zhang; Hu Chen; Hongxia Fu; Patrick S Doyle; Jie Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

6.  A three-state model with loop entropy for the overstretching transition of DNA.

Authors:  Thomas R Einert; Douglas B Staple; Hans-Jürgen Kreuzer; Roland R Netz
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

Review 7.  Single-molecule stretching studies of RNA chaperones.

Authors:  Hao Wu; Ioulia Rouzina; Mark C Williams
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

8.  Statistical mechanics of a double-stranded rod model for DNA melting and elasticity.

Authors:  Jaspreet Singh; Prashant K Purohit
Journal:  Soft Matter       Date:  2020-08-26       Impact factor: 3.679

Review 9.  Optical tweezers experiments resolve distinct modes of DNA-protein binding.

Authors:  Micah J McCauley; Mark C Williams
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

10.  Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes.

Authors:  Alberto Marin-Gonzalez; Cesar L Pastrana; Rebeca Bocanegra; Alejandro Martín-González; J G Vilhena; Rubén Pérez; Borja Ibarra; Clara Aicart-Ramos; Fernando Moreno-Herrero
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

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