Literature DB >> 26500377

Mesoscale simulations of curvature-inducing protein partitioning on lipid bilayer membranes in the presence of mean curvature fields.

Jin Liu1, Richard Tourdot2, Vyas Ramanan1, Neeraj J Agrawal2, Ravi Radhakrishanan3.   

Abstract

The membrane-surface migration of curvature-inducing proteins in response to membrane curvature gradients has been investigated using Monte Carlo simulations of a curvilinear membrane model based on the Helfrich Hamiltonian. Consistent with theoretical and experimental data, we find the proteins that generate curvature can also sense the background membrane curvature, wherein they preferentially partition to the high curvature regions. The partitioning strength depends linearly on local membrane curvature and the slope (or the coupling constant) of the partitioning probability versus mean curvature depends on the membrane bending rigidity and instantaneous curvature field caused by different proteins. Our simulation study allows us to quantitatively characterize and identify the important factors affecting the coupling constant (slope), which may be difficult to determine in experiments. Furthermore, the membrane model is used to study budding of vesicles where it is found that in order to stabilize a mature vesicle with a stable 'neck-region' (or stable membrane overhangs), the area (extent) of the intrinsic curvature region needs to exceed a threshold-critical value. The migration and partitioning of curvature-inducing proteins in a budding vesicle with a stable neck (with a characteristic negative value of the Gaussian curvature) is investigated.

Entities:  

Keywords:  Bin Amphysin Rvs (BAR) domain proteins; Helfrich Hamiltonian; Monte Carlo simulations; clathrin-mediated endocytosis (CME); curvature inducing proteins; curvilinear model; epsin N-terminal homology (ENTH) domain proteins

Year:  2012        PMID: 26500377      PMCID: PMC4613783          DOI: 10.1080/00268976.2012.664661

Source DB:  PubMed          Journal:  Mol Phys        ISSN: 0026-8976            Impact factor:   1.962


  27 in total

1.  In silico models for cellular and molecular immunology: successes, promises and challenges.

Authors:  Arup K Chakraborty; Michael L Dustin; Andrey S Shaw
Journal:  Nat Immunol       Date:  2003-10       Impact factor: 25.606

2.  Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension.

Authors:  Tobias Baumgart; Samuel T Hess; Watt W Webb
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

Review 3.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

Review 4.  Correlation of a dynamic model for immunological synapse formation with effector functions: two pathways to synapse formation.

Authors:  Sung-Joo E Lee; Yuko Hori; Jay T Groves; Michael L Dustin; Arup K Chakraborty
Journal:  Trends Immunol       Date:  2002-10       Impact factor: 16.687

5.  Pathway of membrane fusion with two tension-dependent energy barriers.

Authors:  Andrea Grafmüller; Julian Shillcock; Reinhard Lipowsky
Journal:  Phys Rev Lett       Date:  2007-05-23       Impact factor: 9.161

6.  Phase transitions of the coupled membrane-cytoskeleton modify cellular shape.

Authors:  Alex Veksler; Nir S Gov
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

7.  Membrane curvature controls dynamin polymerization.

Authors:  Aurélien Roux; Gerbrand Koster; Martin Lenz; Benoît Sorre; Jean-Baptiste Manneville; Pierre Nassoy; Patricia Bassereau
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

Review 8.  Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects.

Authors:  Frank L H Brown
Journal:  Q Rev Biophys       Date:  2011-07-01       Impact factor: 5.318

9.  FCHo proteins are nucleators of clathrin-mediated endocytosis.

Authors:  William Mike Henne; Emmanuel Boucrot; Michael Meinecke; Emma Evergren; Yvonne Vallis; Rohit Mittal; Harvey T McMahon
Journal:  Science       Date:  2010-05-06       Impact factor: 47.728

10.  Sorting of lipids and proteins in membrane curvature gradients.

Authors:  A Tian; T Baumgart
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

View more
  15 in total

1.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

2.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

3.  Phenomenology based multiscale models as tools to understand cell membrane and organelle morphologies.

Authors:  N Ramakrishnan; Ravi Radhakrishnan
Journal:  Adv Planar Lipid Bilayers Liposomes       Date:  2015

4.  Nonaxisymmetric Shapes of Biological Membranes from Locally Induced Curvature.

Authors:  Yannick A D Omar; Amaresh Sahu; Roger A Sauer; Kranthi K Mandadapu
Journal:  Biophys J       Date:  2020-07-31       Impact factor: 4.033

5.  Entry modes of ellipsoidal nanoparticles on a membrane during clathrin-mediated endocytosis.

Authors:  Hua Deng; Prashanta Dutta; Jin Liu
Journal:  Soft Matter       Date:  2019-06-26       Impact factor: 3.679

6.  Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

Authors:  N Ramakrishnan; Ryan P Bradley; Richard W Tourdot; Ravi Radhakrishnan
Journal:  J Phys Condens Matter       Date:  2018-05-22       Impact factor: 2.333

7.  Thermodynamic free energy methods to investigate shape transitions in bilayer membranes.

Authors:  N Ramakrishnan; Richard W Tourdot; Ravi Radhakrishnan
Journal:  Int J Adv Eng Sci Appl Math       Date:  2016-01-22

8.  Defining the free-energy landscape of curvature-inducing proteins on membrane bilayers.

Authors:  Richard W Tourdot; N Ramakrishnan; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-08-25

9.  Multiscale computational models in physical systems biology of intracellular trafficking.

Authors:  Richard W Tourdot; Ryan P Bradley; Natesan Ramakrishnan; Ravi Radhakrishnan
Journal:  IET Syst Biol       Date:  2014-10       Impact factor: 1.615

10.  Quantification of Curvature Sensing Behavior of Curvature-Inducing Proteins on Model Wavy Substrates.

Authors:  Richard W Tourdot; N Ramakrishnan; Kshitiz Parihar; Ravi Radhakrishnan
Journal:  J Membr Biol       Date:  2022-03-25       Impact factor: 1.843

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.