Literature DB >> 35333976

Quantification of Curvature Sensing Behavior of Curvature-Inducing Proteins on Model Wavy Substrates.

Richard W Tourdot1, N Ramakrishnan2, Kshitiz Parihar1, Ravi Radhakrishnan3,4.   

Abstract

Curvature-inducing proteins are involved in a variety of membrane remodeling processes in the cell. Several in vitro experiments have quantified the curvature sensing behavior of these proteins in model lipid systems. One such system consists of a membrane bilayer laid atop a wavy substrate (Hsieh in Langmuir 28:12838-12843, 2012). In these experiments, the bilayer conforms to the wavy substrate, and curvature-inducing proteins show preferential segregation on the wavy membrane. Using a mesoscale computational membrane model based on the Helfrich Hamiltonian, here we present a study which analyzes the curvature sensing characteristics of this membrane-protein system, and elucidates key physical principles governing protein segregation on the wavy substrate and other in vitro systems. In this article we compute the local protein densities from the free energy landscape associated with membrane remodeling by curvature-inducing proteins. In specific, we use the Widom insertion technique to compute the free energy landscape for an inhomogeneous system with spatially varying density and the results obtained with this minimal model show excellent agreement with experimental studies that demonstrate the association between membrane curvature and local protein density. The free energy-based framework employed in this study can be used for different membrane morphologies and varied protein characteristics to gain mechanistic insights into protein sorting on membranes.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Curvature sensing; Curvature-inducing proteins; Monte Carlo; Widom insertion

Mesh:

Substances:

Year:  2022        PMID: 35333976     DOI: 10.1007/s00232-022-00228-y

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  19 in total

1.  Amphipathic motifs in BAR domains are essential for membrane curvature sensing.

Authors:  Vikram K Bhatia; Kenneth L Madsen; Pierre-Yves Bolinger; Andreas Kunding; Per Hedegård; Ulrik Gether; Dimitrios Stamou
Journal:  EMBO J       Date:  2009-10-08       Impact factor: 11.598

Review 2.  Dynamin, a membrane-remodelling GTPase.

Authors:  Shawn M Ferguson; Pietro De Camilli
Journal:  Nat Rev Mol Cell Biol       Date:  2012-01-11       Impact factor: 94.444

Review 3.  Thermodynamics and mechanics of membrane curvature generation and sensing by proteins and lipids.

Authors:  Tobias Baumgart; Benjamin R Capraro; Chen Zhu; Sovan L Das
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

4.  Minimal mesoscale model for protein-mediated vesiculation in clathrin-dependent endocytosis.

Authors:  Neeraj J Agrawal; Jonathan Nukpezah; Ravi Radhakrishnan
Journal:  PLoS Comput Biol       Date:  2010-09-09       Impact factor: 4.475

5.  Quantifying Membrane Curvature Generation of Drosophila Amphiphysin N-BAR Domains.

Authors:  Michael C Heinrich; Benjamin R Capraro; Aiwei Tian; Jose M Isas; Ralf Langen; Tobias Baumgart
Journal:  J Phys Chem Lett       Date:  2010-11-16       Impact factor: 6.475

6.  Mesoscale simulations of curvature-inducing protein partitioning on lipid bilayer membranes in the presence of mean curvature fields.

Authors:  Jin Liu; Richard Tourdot; Vyas Ramanan; Neeraj J Agrawal; Ravi Radhakrishanan
Journal:  Mol Phys       Date:  2012-03-01       Impact factor: 1.962

Review 7.  Membrane curvature at a glance.

Authors:  Harvey T McMahon; Emmanuel Boucrot
Journal:  J Cell Sci       Date:  2015-03-15       Impact factor: 5.285

Review 8.  Mechanisms shaping cell membranes.

Authors:  Michael M Kozlov; Felix Campelo; Nicole Liska; Leonid V Chernomordik; Siewert J Marrink; Harvey T McMahon
Journal:  Curr Opin Cell Biol       Date:  2014-04-18       Impact factor: 8.382

9.  Membrane binding and self-association of the epsin N-terminal homology domain.

Authors:  Chun-Liang Lai; Christine C Jao; Edward Lyman; Jennifer L Gallop; Brian J Peter; Harvey T McMahon; Ralf Langen; Gregory A Voth
Journal:  J Mol Biol       Date:  2012-08-24       Impact factor: 5.469

Review 10.  Membrane curvature in cell biology: An integration of molecular mechanisms.

Authors:  Iris K Jarsch; Frederic Daste; Jennifer L Gallop
Journal:  J Cell Biol       Date:  2016-08-15       Impact factor: 10.539

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