Literature DB >> 28396424

Spontaneous emergence of catalytic cycles with colloidal spheres.

Zorana Zeravcic1,2,3,4, Michael P Brenner3,4.   

Abstract

Colloidal particles endowed with specific time-dependent interactions are a promising route for realizing artificial materials that have the properties of living ones. Previous work has demonstrated how this system can give rise to self-replication. Here, we introduce the process of colloidal catalysis, in which clusters of particles catalyze the creation of other clusters through templating reactions. Surprisingly, we find that simple templating rules generically lead to the production of huge numbers of clusters. The templating reactions among this sea of clusters give rise to an exponentially growing catalytic cycle, a specific realization of Dyson's notion of an exponentially growing metabolism. We demonstrate this behavior with a fixed set of interactions between particles chosen to allow a catalysis of a specific six-particle cluster from a specific seven-particle cluster, yet giving rise to the catalytic production of a sea of clusters of sizes between 2 and 11 particles. The fact that an exponentially growing cycle emerges naturally from such a simple scheme demonstrates that the emergence of exponentially growing metabolisms could be simpler than previously imagined.

Keywords:  DNA-coated colloids; catalytic cycles; metabolism; templating

Year:  2017        PMID: 28396424      PMCID: PMC5410808          DOI: 10.1073/pnas.1611959114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Integrating DNA-strand-displacement circuitry with self-assembly of spherical nucleic acids.

Authors:  Dongbao Yao; Tingjie Song; Xianbao Sun; Shiyan Xiao; Fujian Huang; Haojun Liang
Journal:  J Am Chem Soc       Date:  2015-11-02       Impact factor: 15.419

2.  Random biochemical networks: the probability of self-sustaining autocatalysis.

Authors:  Elchanan Mossel; Mike Steel
Journal:  J Theor Biol       Date:  2005-04-07       Impact factor: 2.691

3.  Minimal energy clusters of hard spheres with short range attractions.

Authors:  Natalie Arkus; Vinothan N Manoharan; Michael P Brenner
Journal:  Phys Rev Lett       Date:  2009-09-11       Impact factor: 9.161

4.  Design rule for colloidal crystals of DNA-functionalized particles.

Authors:  Francisco J Martinez-Veracoechea; Bianca M Mladek; Alexei V Tkachenko; Daan Frenkel
Journal:  Phys Rev Lett       Date:  2011-07-20       Impact factor: 9.161

5.  Rational design of self-assembly pathways for complex multicomponent structures.

Authors:  William M Jacobs; Aleks Reinhardt; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

6.  Size limits of self-assembled colloidal structures made using specific interactions.

Authors:  Zorana Zeravcic; Vinothan N Manoharan; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

7.  A coarse-grained model for DNA-functionalized spherical colloids, revisited: effective pair potential from parallel replica simulations.

Authors:  Panagiotis E Theodorakis; Christoph Dellago; Gerhard Kahl
Journal:  J Chem Phys       Date:  2013-01-14       Impact factor: 3.488

8.  Self-replicating colloidal clusters.

Authors:  Zorana Zeravcic; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

9.  Mobile linkers on DNA-coated colloids: valency without patches.

Authors:  Stefano Angioletti-Uberti; Patrick Varilly; Bortolo M Mognetti; Daan Frenkel
Journal:  Phys Rev Lett       Date:  2014-09-17       Impact factor: 9.161

10.  Self-replication of information-bearing nanoscale patterns.

Authors:  Tong Wang; Ruojie Sha; Rémi Dreyfus; Mirjam E Leunissen; Corinna Maass; David J Pine; Paul M Chaikin; Nadrian C Seeman
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

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  2 in total

1.  Programming colloidal bonding using DNA strand-displacement circuitry.

Authors:  Xiang Zhou; Dongbao Yao; Wenqiang Hua; Ningdong Huang; Xiaowei Chen; Liangbin Li; Miao He; Yunhan Zhang; Yijun Guo; Shiyan Xiao; Fenggang Bian; Haojun Liang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-04       Impact factor: 11.205

2.  Self-assembly of emulsion droplets through programmable folding.

Authors:  Angus McMullen; Maitane Muñoz Basagoiti; Zorana Zeravcic; Jasna Brujic
Journal:  Nature       Date:  2022-09-28       Impact factor: 69.504

  2 in total

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