Literature DB >> 26487720

Steric Crowding of the Turn Region Alters the Tertiary Fold of Amyloid-β18-35 and Makes It Soluble.

Muralidharan Chandrakesan1, Debanjan Bhowmik2, Bidyut Sarkar2, Rajiv Abhyankar2, Harwinder Singh3, Mamata Kallianpur2, Sucheta P Dandekar1, Perunthiruthy K Madhu4, Sudipta Maiti5, Venus Singh Mithu6.   

Abstract

Aβ self-assembles into parallel cross-β fibrillar aggregates, which is associated with Alzheimer's disease pathology. A central hairpin turn around residues 23-29 is a defining characteristic of Aβ in its aggregated state. Major biophysical properties of Aβ, including this turn, remain unaltered in the central fragment Aβ18-35. Here, we synthesize a single deletion mutant, ΔG25, with the aim of sterically hindering the hairpin turn in Aβ18-35. We find that the solubility of the peptide goes up by more than 20-fold. Although some oligomeric structures do form, solution state NMR spectroscopy shows that they have mostly random coil conformations. Fibrils ultimately form at a much higher concentration but have widths approximately twice that of Aβ18-35, suggesting an opening of the hairpin bend. Surprisingly, two-dimensional solid state NMR shows that the contact between Phe(19) and Leu(34) residues, observed in full-length Aβ and Aβ18-35, is still intact in these fibrils. This is possible if the monomers in the fibril are arranged in an antiparallel β-sheet conformation. Indeed, IR measurements, supported by tyrosine cross-linking experiments, provide a characteristic signature of the antiparallel β-sheet. We conclude that the self-assembly of Aβ is critically dependent on the hairpin turn and on the contact between the Phe(19) and Leu(34) regions, making them potentially sensitive targets for Alzheimer's therapeutics. Our results show the importance of specific conformations in an aggregation process thought to be primarily driven by nonspecific hydrophobic interactions.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Alzheimer disease; amyloid; fluorescence correlation spectroscopy (FCS); nuclear magnetic resonance (NMR); protein aggregation; protein self-assembly; solid state NMR

Mesh:

Substances:

Year:  2015        PMID: 26487720      PMCID: PMC4705980          DOI: 10.1074/jbc.M115.674135

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  Measuring diffusion in cell membranes by fluorescence correlation spectroscopy.

Authors:  Parijat Sengupta; J Balaji; Sudipta Maiti
Journal:  Methods       Date:  2002-08       Impact factor: 3.608

2.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

Review 3.  Amyloid β Protein and Alzheimer's Disease: When Computer Simulations Complement Experimental Studies.

Authors:  Jessica Nasica-Labouze; Phuong H Nguyen; Fabio Sterpone; Olivia Berthoumieu; Nicolae-Viorel Buchete; Sébastien Coté; Alfonso De Simone; Andrew J Doig; Peter Faller; Angel Garcia; Alessandro Laio; Mai Suan Li; Simone Melchionna; Normand Mousseau; Yuguang Mu; Anant Paravastu; Samuela Pasquali; David J Rosenman; Birgit Strodel; Bogdan Tarus; John H Viles; Tong Zhang; Chunyu Wang; Philippe Derreumaux
Journal:  Chem Rev       Date:  2015-03-19       Impact factor: 60.622

4.  Local interactions influence the fibrillation kinetics, structure and dynamics of Aβ(1-40) but leave the general fibril structure unchanged.

Authors:  Juliane Adler; Holger A Scheidt; Martin Krüger; Lars Thomas; Daniel Huster
Journal:  Phys Chem Chem Phys       Date:  2014-04-28       Impact factor: 3.676

5.  Significant structural differences between transient amyloid-β oligomers and less-toxic fibrils in regions known to harbor familial Alzheimer's mutations.

Authors:  Bidyut Sarkar; Venus Singh Mithu; Bappaditya Chandra; Arghya Mandal; Muralidharan Chandrakesan; Debanjan Bhowmik; Perunthiruthy K Madhu; Sudipta Maiti
Journal:  Angew Chem Int Ed Engl       Date:  2014-04-23       Impact factor: 15.336

6.  An early folding contact between Phe19 and Leu34 is critical for amyloid-β oligomer toxicity.

Authors:  Anand K Das; Anoop Rawat; Debanjan Bhowmik; Rucha Pandit; Daniel Huster; Sudipta Maiti
Journal:  ACS Chem Neurosci       Date:  2015-05-20       Impact factor: 4.418

7.  Curcumin alters the salt bridge-containing turn region in amyloid β(1-42) aggregates.

Authors:  Venus Singh Mithu; Bidyut Sarkar; Debanjan Bhowmik; Anand Kant Das; Muralidharan Chandrakesan; Sudipta Maiti; Perunthiruthy K Madhu
Journal:  J Biol Chem       Date:  2014-03-05       Impact factor: 5.157

8.  Kinetics of oxidation of tyrosine and dityrosine by myeloperoxidase compounds I and II. Implications for lipoprotein peroxidation studies.

Authors:  L A Marquez; H B Dunford
Journal:  J Biol Chem       Date:  1995-12-22       Impact factor: 5.157

9.  A central role for dityrosine crosslinking of Amyloid-β in Alzheimer's disease.

Authors:  Youssra K Al-Hilaly; Thomas L Williams; Maris Stewart-Parker; Lenzie Ford; Eldhose Skaria; Michael Cole; William Grant Bucher; Kyle L Morris; Alaa Abdul Sada; Julian R Thorpe; Louise C Serpell
Journal:  Acta Neuropathol Commun       Date:  2013-12-18       Impact factor: 7.801

10.  X-ray crystallographic structures of trimers and higher-order oligomeric assemblies of a peptide derived from Aβ(17-36).

Authors:  Ryan K Spencer; Hao Li; James S Nowick
Journal:  J Am Chem Soc       Date:  2014-04-03       Impact factor: 15.419

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