Literature DB >> 26486590

Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae.

Bärbel U Foesel1,2, Susanne Mayer1, Manja Luckner3, Gerhard Wanner3, Manfred Rohde4, Jörg Overmann2,1,5.   

Abstract

Three Gram-negative, non-spore-forming, encapsulated bacteria were isolated from a Namibian river-bank soil (strains 277T and 307) and a semiarid savannah soil (strain A2-1cT). 16S rRNA gene sequence analyses placed them within subdivision 1 of the Acidobacteria and revealed 100 % similarity between strains 277T and 307 and 98.2 % similarity between A2-1cT and the former two strains. The closest relatives with validly published names were Telmatobacter bradus, Acidicapsa borealis and Acidicapsa ligni (94.7-95.9 % similarity to the type strains). Cells of all three strains were rod-shaped and motile and divided by binary fission. Ultrastructural analyses revealed a thick cell envelope, resulting mainly from a thick periplasmic space. Colonies of strains 277T and 307 were white to cream and light pink, respectively, while strain A2-1cT displayed a bright pink colour. All three strains were aerobic, chemoheterotrophic mesophiles with a broad temperature range for growth and a moderately acidic pH optimum. Sugars and complex proteinaceous substrates were the preferred carbon and energy sources. A few polysaccharides were degraded. The major quinone in all three strains was MK-8; MK-7 occurred in strain A2-1cT as a minor compound. Major fatty acids were iso-C15 : 0 and iso-C17 : 1ω7c. In addition, iso-C17 : 0 occurred in significant amounts. The DNA G+C contents of strains 277T, 307 and A2-1cT were 59.6, 59.9 and 58.5 mol%, respectively. Based on these characteristics, the three isolates are assigned to two novel species of the novel genus Occallatibacter gen. nov., Occallatibacter riparius sp. nov. [type strain 277T ( = DSM 25168T = LMG 26948T) and reference strain 307 ( = DSM 25169 = LMG 26947)] and Occallatibacter savannae sp. nov. [type strain A2-1cT ( = DSM 25170T = LMG 26946T)]. Together with several other recently described taxa, the novel isolates provide the basis for an emended description of the established family Acidobacteriaceae.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26486590     DOI: 10.1099/ijsem.0.000700

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  11 in total

Review 1.  Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Authors:  Thomas Cavalier-Smith; Ema E-Yung Chao
Journal:  Protoplasma       Date:  2020-01-03       Impact factor: 3.356

2.  Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids.

Authors:  Otávio Henrique Bezerra Pinto; Flávio Silva Costa; Gisele Regina Rodrigues; Rosiane Andrade da Costa; Gabriel da Rocha Fernandes; Osmindo Rodrigues Pires Júnior; Cristine Chaves Barreto
Journal:  Microb Ecol       Date:  2020-07-02       Impact factor: 4.552

3.  Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters.

Authors:  Carmen Falagán; Bärbel Foesel; Barrie Johnson
Journal:  Extremophiles       Date:  2017-02-22       Impact factor: 2.395

4.  High Diversity and Functional Potential of Undescribed "Acidobacteriota" in Danish Wastewater Treatment Plants.

Authors:  Jannie Munk Kristensen; Caitlin Singleton; Lee-Ann Clegg; Francesca Petriglieri; Per Halkjaer Nielsen
Journal:  Front Microbiol       Date:  2021-04-22       Impact factor: 5.640

Review 5.  The Ecology of Acidobacteria: Moving beyond Genes and Genomes.

Authors:  Anna M Kielak; Cristine C Barreto; George A Kowalchuk; Johannes A van Veen; Eiko E Kuramae
Journal:  Front Microbiol       Date:  2016-05-31       Impact factor: 5.640

6.  Pheno- and Genotyping of Hopanoid Production in Acidobacteria.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Svetlana N Dedysh; Bärbel U Foesel; Laura Villanueva
Journal:  Front Microbiol       Date:  2017-06-08       Impact factor: 5.640

7.  Rhizobacterial community structure in response to nitrogen addition varied between two Mollisols differing in soil organic carbon.

Authors:  Tengxiang Lian; Zhenhua Yu; Junjie Liu; Yansheng Li; Guanghua Wang; Xiaobing Liu; Stephen J Herbert; Junjiang Wu; Jian Jin
Journal:  Sci Rep       Date:  2018-08-16       Impact factor: 4.379

8.  Distribution patterns of Acidobacteriota in different fynbos soils.

Authors:  Tersia Andrea Conradie; Karin Jacobs
Journal:  PLoS One       Date:  2021-03-22       Impact factor: 3.240

9.  Soil Bacterial and Archaeal Communities and Their Potential to Perform N-Cycling Processes in Soils of Boreal Forests Growing on Well-Drained Peat.

Authors:  Marika Truu; Hiie Nõlvak; Ivika Ostonen; Kristjan Oopkaup; Martin Maddison; Teele Ligi; Mikk Espenberg; Veiko Uri; Ülo Mander; Jaak Truu
Journal:  Front Microbiol       Date:  2020-12-03       Impact factor: 5.640

10.  Comparative Metagenomic Study of Rhizospheric and Bulk Mercury-Contaminated Soils in the Mining District of Almadén.

Authors:  Daniel González; Marina Robas; Vanesa Fernández; Marta Bárcena; Agustín Probanza; Pedro A Jiménez
Journal:  Front Microbiol       Date:  2022-03-07       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.