Literature DB >> 26472760

Gene essentiality and synthetic lethality in haploid human cells.

Vincent A Blomen1, Peter Májek2, Lucas T Jae1, Johannes W Bigenzahn2, Joppe Nieuwenhuis1, Jacqueline Staring1, Roberto Sacco2, Ferdy R van Diemen1, Nadine Olk2, Alexey Stukalov2, Caleb Marceau3, Hans Janssen1, Jan E Carette3, Keiryn L Bennett2, Jacques Colinge4, Giulio Superti-Furga5, Thijn R Brummelkamp6.   

Abstract

Although the genes essential for life have been identified in less complex model organisms, their elucidation in human cells has been hindered by technical barriers. We used extensive mutagenesis in haploid human cells to identify approximately 2000 genes required for optimal fitness under culture conditions. To study the principles of genetic interactions in human cells, we created a synthetic lethality network focused on the secretory pathway based exclusively on mutations. This revealed a genetic cross-talk governing Golgi homeostasis, an additional subunit of the human oligosaccharyltransferase complex, and a phosphatidylinositol 4-kinase β adaptor hijacked by viruses. The synthetic lethality map parallels observations made in yeast and projects a route forward to reveal genetic networks in diverse aspects of human cell biology.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 26472760     DOI: 10.1126/science.aac7557

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  341 in total

1.  Polo-like kinase 4 maintains centriolar satellite integrity by phosphorylation of centrosomal protein 131 (CEP131).

Authors:  Ryan A Denu; Madilyn M Sass; James M Johnson; Gregory K Potts; Alka Choudhary; Joshua J Coon; Mark E Burkard
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  Functional genomics: The genetic essence of human cells.

Authors:  Joana Osório
Journal:  Nat Rev Genet       Date:  2015-10-27       Impact factor: 53.242

Review 3.  Functional genomics to uncover drug mechanism of action.

Authors:  Sebastian M B Nijman
Journal:  Nat Chem Biol       Date:  2015-11-17       Impact factor: 15.040

4.  The Hidden Complexity of Mendelian Traits across Natural Yeast Populations.

Authors:  Jing Hou; Anastasie Sigwalt; Téo Fournier; David Pflieger; Jackson Peter; Jacky de Montigny; Maitreya J Dunham; Joseph Schacherer
Journal:  Cell Rep       Date:  2016-07-07       Impact factor: 9.423

5.  Mapping a diversity of genetic interactions in yeast.

Authors:  Jolanda van Leeuwen; Charles Boone; Brenda J Andrews
Journal:  Curr Opin Syst Biol       Date:  2017-08-12

6.  Omics Assisted N-terminal Proteoform and Protein Expression Profiling On Methionine Aminopeptidase 1 (MetAP1) Deletion.

Authors:  Veronique Jonckheere; Daria Fijałkowska; Petra Van Damme
Journal:  Mol Cell Proteomics       Date:  2018-01-09       Impact factor: 5.911

7.  Oligosaccharyltransferase inhibition induces senescence in RTK-driven tumor cells.

Authors:  Cecilia Lopez-Sambrooks; Shiteshu Shrimal; Carol Khodier; Daniel P Flaherty; Natalie Rinis; Jonathan C Charest; Ningguo Gao; Peng Zhao; Lance Wells; Timothy A Lewis; Mark A Lehrman; Reid Gilmore; Jennifer E Golden; Joseph N Contessa
Journal:  Nat Chem Biol       Date:  2016-10-03       Impact factor: 15.040

8.  Somatic evolution and global expansion of an ancient transmissible cancer lineage.

Authors:  Kevin Gori; Andrea Strakova; Adrian Baez-Ortega; Janice L Allen; Karen M Allum; Leontine Bansse-Issa; Thinlay N Bhutia; Jocelyn L Bisson; Cristóbal Briceño; Artemio Castillo Domracheva; Anne M Corrigan; Hugh R Cran; Jane T Crawford; Eric Davis; Karina F de Castro; Andrigo B de Nardi; Anna P de Vos; Laura Delgadillo Keenan; Edward M Donelan; Adela R Espinoza Huerta; Ibikunle A Faramade; Mohammed Fazil; Eleni Fotopoulou; Skye N Fruean; Fanny Gallardo-Arrieta; Olga Glebova; Pagona G Gouletsou; Rodrigo F Häfelin Manrique; Joaquim J G P Henriques; Rodrigo S Horta; Natalia Ignatenko; Yaghouba Kane; Cathy King; Debbie Koenig; Ada Krupa; Steven J Kruzeniski; Young-Mi Kwon; Marta Lanza-Perea; Mihran Lazyan; Adriana M Lopez Quintana; Thibault Losfelt; Gabriele Marino; Simón Martínez Castañeda; Mayra F Martínez-López; Michael Meyer; Edward J Migneco; Berna Nakanwagi; Karter B Neal; Winifred Neunzig; Máire Ní Leathlobhair; Sally J Nixon; Antonio Ortega-Pacheco; Francisco Pedraza-Ordoñez; Maria C Peleteiro; Katherine Polak; Ruth J Pye; John F Reece; Jose Rojas Gutierrez; Haleema Sadia; Sheila K Schmeling; Olga Shamanova; Alan G Sherlock; Maximilian Stammnitz; Audrey E Steenland-Smit; Alla Svitich; Lester J Tapia Martínez; Ismail Thoya Ngoka; Cristian G Torres; Elizabeth M Tudor; Mirjam G van der Wel; Bogdan A Viţălaru; Sevil A Vural; Oliver Walkinton; Jinhong Wang; Alvaro S Wehrle-Martinez; Sophie A E Widdowson; Michael R Stratton; Ludmil B Alexandrov; Iñigo Martincorena; Elizabeth P Murchison
Journal:  Science       Date:  2019-08-02       Impact factor: 47.728

Review 9.  Genetic Network Complexity Shapes Background-Dependent Phenotypic Expression.

Authors:  Jing Hou; Jolanda van Leeuwen; Brenda J Andrews; Charles Boone
Journal:  Trends Genet       Date:  2018-06-11       Impact factor: 11.639

10.  Systematic Identification of Host Cell Regulators of Legionella pneumophila Pathogenesis Using a Genome-wide CRISPR Screen.

Authors:  Edwin E Jeng; Varun Bhadkamkar; Nnejiuwa U Ibe; Haley Gause; Lihua Jiang; Joanne Chan; Ruiqi Jian; David Jimenez-Morales; Erica Stevenson; Nevan J Krogan; Danielle L Swaney; Michael P Snyder; Shaeri Mukherjee; Michael C Bassik
Journal:  Cell Host Microbe       Date:  2019-09-17       Impact factor: 21.023

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