Literature DB >> 26459915

Surface vs. solution hybridization: effects of salt, temperature, and probe type.

Wanqiong Qiao1, Hao-Chun Chiang1, Hui Xie1, Rastislav Levicky1.   

Abstract

Hybridization thermodynamics on solid supports are compared with those in solution for two types of hybridization probe, DNA and uncharged morpholino oligonucleotides of identical sequences. Trends in hybridization affinity are discussed with respect to ionic strength, temperature, and surface behavior.

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Year:  2015        PMID： 26459915      PMCID： PMC4659738          DOI： 10.1039/c5cc06674c

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  25 in total

1.  Electrostatic surface plasmon resonance: direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches.

Authors:  R J Heaton; A W Peterson; R M Georgiadis
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

2.  Hybridization of mismatched or partially matched DNA at surfaces.

Authors:  Alexander W Peterson; Lauren K Wolf; Rosina M Georgiadis
Journal:  J Am Chem Soc       Date:  2002-12-11       Impact factor: 15.419

3.  Coulomb blockage of hybridization in two-dimensional DNA arrays.

Authors:  Arnold Vainrub; B Montgomery Pettitt
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-10-17

4.  Nanoparticle superlattice engineering with DNA.

Authors:  Robert J Macfarlane; Byeongdu Lee; Matthew R Jones; Nadine Harris; George C Schatz; Chad A Mirkin
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

5.  Effect of ionic strength on PNA-DNA hybridization on surfaces and in solution.

Authors:  Hyeyoung Park; Andrea Germini; Stefano Sforza; Roberto Corradini; Rosangela Marchelli; Wolfgang Knoll
Journal:  Biointerphases       Date:  2007-06       Impact factor: 2.456

6.  Biomolecule-nanoparticle hybrids as functional units for nanobiotechnology.

Authors:  Ronan Baron; Bilha Willner; Itamar Willner
Journal:  Chem Commun (Camb)       Date:  2006-09-15       Impact factor: 6.222

7.  Absorbance melting curves of RNA.

Authors:  J D Puglisi; I Tinoco
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

8.  BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.

Authors:  Archana N Rao; David W Grainger
Journal:  Biomater Sci       Date:  2014-04-01       Impact factor: 6.843

9.  Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions.

Authors:  Davis Jose; Kausiki Datta; Neil P Johnson; Peter H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

10.  DNA hairpin stabilization on a hydrophobic surface.

Authors:  Mark Kastantin; Daniel K Schwartz
Journal:  Small       Date:  2012-11-26       Impact factor: 13.281
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  4 in total

1.  Modeling Effects of Surface Properties and Probe Density for Nanoscale Biosensor Design: A Case Study of DNA Hybridization near Surfaces.

Authors:  Timothy Cholko; Chia-En A Chang
Journal:  J Phys Chem B       Date:  2021-02-16       Impact factor: 2.991

2.  Non-Langmuir Kinetics of DNA Surface Hybridization.

Authors:  Luka Vanjur; Thomas Carzaniga; Luca Casiraghi; Marcella Chiari; Giuliano Zanchetta; Marco Buscaglia
Journal:  Biophys J       Date:  2020-07-29       Impact factor: 4.033

Review 3.  DNA hybridisation kinetics using single-molecule fluorescence imaging.

Authors:  Rebecca Andrews
Journal:  Essays Biochem       Date:  2021-04-16       Impact factor: 8.000

4.  Label-Free Oligonucleotide-Based SPR Biosensor for the Detection of the Gene Mutation Causing Prothrombin-Related Thrombophilia.

Authors:  Rodrigo Sierpe; Marcelo J Kogan; Soledad Bollo
Journal:  Sensors (Basel)       Date:  2020-10-31       Impact factor: 3.576
  4 in total

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