Literature DB >> 26459005

Differential scanning calorimetry as a complementary diagnostic tool for the evaluation of biological samples.

Nichola C Garbett1, Guy N Brock2.   

Abstract

BACKGROUND: Differential scanning calorimetry (DSC) is a tool for measuring the thermal stability profiles of complex molecular interactions in biological fluids. DSC profiles (thermograms) of biofluids provide specific signatures which are being utilized as a new diagnostic approach for characterizing disease but the development of these approaches is still in its infancy.
METHODS: This article evaluates several approaches for the analysis of thermograms which could increase the utility of DSC for clinical application. Thermograms were analyzed using localized thermogram features and principal components (PCs). The performance of these methods was evaluated alongside six models for the classification of a data set comprised of 300 systemic lupus erythematosus (SLE) patients and 300 control subjects obtained from the Lupus Family Registry and Repository (LFRR).
RESULTS: Classification performance was substantially higher using the penalized algorithms relative to localized features/PCs alone. The models were grouped into two sets, the first having smoother solution vectors but lower classification accuracies than the second with seemingly noisier solution vectors.
CONCLUSIONS: Coupling thermogram technology with modern classification algorithms provides a powerful diagnostic approach for analysis of biological samples. The solution vectors from the models may reflect important information from the thermogram profiles for discriminating between clinical groups. GENERAL SIGNIFICANCE: DSC thermograms show sensitivity to changes in the bulk plasma proteome that correlate with clinical status. To move this technology towards clinical application the development of new approaches is needed to extract discriminatory parameters from DSC profiles for the comparison and diagnostic classification of patients.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Diagnostic classification; Differential scanning calorimetry; Penalized classification methods; Plasma proteome; Systemic lupus erythematosus; Thermogram

Mesh:

Substances:

Year:  2015        PMID: 26459005      PMCID: PMC4799750          DOI: 10.1016/j.bbagen.2015.10.004

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  25 in total

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Authors:  Nichola C Garbett; James J Miller; A Bennett Jenson; Donald M Miller; Jonathan B Chaires
Journal:  Clin Chem       Date:  2007-11       Impact factor: 8.327

2.  Calorimetry outside the box: a new window into the plasma proteome.

Authors:  Nichola C Garbett; James J Miller; Alfred B Jenson; Jonathan B Chaires
Journal:  Biophys J       Date:  2007-10-19       Impact factor: 4.033

3.  Preliminary use of differential scanning calorimetry of cerebrospinal fluid for the diagnosis of glioblastoma multiforme.

Authors:  Alexis A Chagovetz; Randy L Jensen; Larry Recht; Michael Glantz; Alexander M Chagovetz
Journal:  J Neurooncol       Date:  2011-07-01       Impact factor: 4.130

4.  Updating the American College of Rheumatology revised criteria for the classification of systemic lupus erythematosus.

Authors:  M C Hochberg
Journal:  Arthritis Rheum       Date:  1997-09

5.  Microcalorimetry of blood serum proteome: a modified interaction network in the multiple myeloma case.

Authors:  Svetla Todinova; Sashka Krumova; Lidia Gartcheva; Christien Robeerst; Stefka G Taneva
Journal:  Anal Chem       Date:  2011-09-28       Impact factor: 6.986

6.  The lupus family registry and repository.

Authors:  Astrid Rasmussen; Sydney Sevier; Jennifer A Kelly; Stuart B Glenn; Teresa Aberle; Carisa M Cooney; Anya Grether; Ellen James; Jared Ning; Joanne Tesiram; Jean Morrisey; Tiny Powe; Mark Drexel; Wes Daniel; Bahram Namjou; Joshua O Ojwang; Kim L Nguyen; Joshua W Cavett; Jeannie L Te; Judith A James; R Hal Scofield; Kathy Moser; Gary S Gilkeson; Diane L Kamen; Craig W Carson; Ana I Quintero-del-Rio; Maria del Carmen Ballesteros; Marilynn G Punaro; David R Karp; Daniel J Wallace; Michael Weisman; Joan T Merrill; Roberto Rivera; Michelle A Petri; Daniel A Albert; Luis R Espinoza; Tammy O Utset; Timothy S Shaver; Eugene Arthur; Juan-Manuel Anaya; Gail R Bruner; John B Harley
Journal:  Rheumatology (Oxford)       Date:  2010-09-23       Impact factor: 7.580

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Authors:  Alexis A Chagovetz; Colette Quinn; Neil Damarse; Lee D Hansen; Alexander M Chagovetz; Randy L Jensen
Journal:  Neurosurgery       Date:  2013-08       Impact factor: 4.654

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Authors:  Nichola C Garbett; Michael L Merchant; Jonathan B Chaires; Jon B Klein
Journal:  Biochim Biophys Acta       Date:  2013-05-10
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  11 in total

1.  Calorimetric markers for monitoring of multiple myeloma and Waldenström's macroglobulinemia patients.

Authors:  Svetla Todinova; Sashka Krumova; Avgustina Danailova; Violeta Petkova; Margarita Guenova; Georgi Mihaylov; Lidia Gartcheva; Stefka Germanova Taneva
Journal:  Eur Biophys J       Date:  2018-01-23       Impact factor: 1.733

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Journal:  PLoS One       Date:  2022-06-10       Impact factor: 3.752

3.  Application and interpretation of functional data analysis techniques to differential scanning calorimetry data from lupus patients.

Authors:  Sarah K Kendrick; Qi Zheng; Nichola C Garbett; Guy N Brock
Journal:  PLoS One       Date:  2017-11-09       Impact factor: 3.240

4.  Characterization and classification of lupus patients based on plasma thermograms.

Authors:  Nichola C Garbett; Guy N Brock; Jonathan B Chaires; Chongkham S Mekmaysy; Lynn DeLeeuw; Kathy L Sivils; John B Harley; Brad H Rovin; K B Kulasekera; Wael N Jarjour
Journal:  PLoS One       Date:  2017-11-17       Impact factor: 3.240

5.  Multi-group diagnostic classification of high-dimensional data using differential scanning calorimetry plasma thermograms.

Authors:  Shesh N Rai; Sudhir Srivastava; Jianmin Pan; Xiaoyong Wu; Somesh P Rai; Chongkham S Mekmaysy; Lynn DeLeeuw; Jonathan B Chaires; Nichola C Garbett
Journal:  PLoS One       Date:  2019-08-20       Impact factor: 3.240

6.  Thermal Liquid Biopsy (TLB) Focused on Benign and Premalignant Pancreatic Cyst Diagnosis.

Authors:  Sonia Hermoso-Durán; Guillermo García-Rayado; Laura Ceballos-Laita; Carlos Sostres; Sonia Vega; Judith Millastre; Oscar Sánchez-Gracia; Jorge L Ojeda; Ángel Lanas; Adrián Velázquez-Campoy; Olga Abian
Journal:  J Pers Med       Date:  2020-12-31

7.  Red Blood Cells' Thermodynamic Behavior in Neurodegenerative Pathologies and Aging.

Authors:  Svetla Todinova; Sashka Krumova; Desislava Bogdanova; Avgustina Danailova; Elena Zlatareva; Nikolay Kalaydzhiev; Ariana Langari; Ivan Milanov; Stefka G Taneva
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8.  Altered Thermal Behavior of Blood Plasma Proteome Related to Inflammatory Cytokines in Early Pregnancy Loss.

Authors:  Regina Komsa-Penkova; Avgustina Danailova; Sashka Krumova; Galya Georgieva; Ina Giosheva; Lidia Gartcheva; Ivan Iliev; Emil Gartchev; Kameliya Kercheva; Alexey Savov; Svetla Todinova
Journal:  Int J Mol Sci       Date:  2022-08-06       Impact factor: 6.208

9.  MALDI-TOF analysis of blood serum proteome can predict the presence of monoclonal gammopathy of undetermined significance.

Authors:  Francisca Barceló; Rosa Gomila; Ivan de Paul; Xavier Gili; Jaume Segura; Albert Pérez-Montaña; Teresa Jimenez-Marco; Antonia Sampol; José Portugal
Journal:  PLoS One       Date:  2018-08-02       Impact factor: 3.240

10.  Dual-specificity phosphatase (DUSP) genetic variants predict pulmonary hypertension in patients with bronchopulmonary dysplasia.

Authors:  Lauren L Chen; Erik J Zmuda; Maria M Talavera; Jessica Frick; Guy N Brock; Yusen Liu; Mark A Klebanoff; Jennifer K Trittmann
Journal:  Pediatr Res       Date:  2019-07-22       Impact factor: 3.756

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