Literature DB >> 20864496

The lupus family registry and repository.

Astrid Rasmussen1, Sydney Sevier, Jennifer A Kelly, Stuart B Glenn, Teresa Aberle, Carisa M Cooney, Anya Grether, Ellen James, Jared Ning, Joanne Tesiram, Jean Morrisey, Tiny Powe, Mark Drexel, Wes Daniel, Bahram Namjou, Joshua O Ojwang, Kim L Nguyen, Joshua W Cavett, Jeannie L Te, Judith A James, R Hal Scofield, Kathy Moser, Gary S Gilkeson, Diane L Kamen, Craig W Carson, Ana I Quintero-del-Rio, Maria del Carmen Ballesteros, Marilynn G Punaro, David R Karp, Daniel J Wallace, Michael Weisman, Joan T Merrill, Roberto Rivera, Michelle A Petri, Daniel A Albert, Luis R Espinoza, Tammy O Utset, Timothy S Shaver, Eugene Arthur, Juan-Manuel Anaya, Gail R Bruner, John B Harley.   

Abstract

The Lupus Family Registry and Repository (LFRR) was established with the goal of assembling and distributing materials and data from families with one or more living members diagnosed with SLE, in order to address SLE genetics. In the present article, we describe the problems and solutions of the registry design and biometric data gathering; the protocols implemented to guarantee data quality and protection of participant privacy and consent; and the establishment of a local and international network of collaborators. At the same time, we illustrate how the LFRR has enabled progress in lupus genetics research, answering old scientific questions while laying out new challenges in the elucidation of the biologic mechanisms that underlie disease pathogenesis. Trained staff ascertain SLE cases, unaffected family members and population-based controls, proceeding in compliance with the relevant laws and standards; participant consent and privacy are central to the LFRR's effort. Data, DNA, serum, plasma, peripheral blood and transformed B-cell lines are collected and stored, and subject to strict quality control and safety measures. Coded data and materials derived from the registry are available for approved scientific users. The LFRR has contributed to the discovery of most of the 37 genetic associations now known to contribute to lupus through 104 publications. The LFRR contains 2618 lupus cases from 1954 pedigrees that are being studied by 76 approved users and their collaborators. The registry includes difficult to obtain populations, such as multiplex pedigrees, minority patients and affected males, and constitutes the largest collection of lupus pedigrees in the world. The LFRR is a useful resource for the discovery and characterization of genetic associations in SLE.

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Year:  2010        PMID: 20864496      PMCID: PMC3307518          DOI: 10.1093/rheumatology/keq302

Source DB:  PubMed          Journal:  Rheumatology (Oxford)        ISSN: 1462-0324            Impact factor:   7.580


  65 in total

1.  Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.

Authors:  Geoffrey Hom; Robert R Graham; Barmak Modrek; Kimberly E Taylor; Ward Ortmann; Sophie Garnier; Annette T Lee; Sharon A Chung; Ricardo C Ferreira; P V Krishna Pant; Dennis G Ballinger; Roman Kosoy; F Yesim Demirci; M Ilyas Kamboh; Amy H Kao; Chao Tian; Iva Gunnarsson; Anders A Bengtsson; Solbritt Rantapää-Dahlqvist; Michelle Petri; Susan Manzi; Michael F Seldin; Lars Rönnblom; Ann-Christine Syvänen; Lindsey A Criswell; Peter K Gregersen; Timothy W Behrens
Journal:  N Engl J Med       Date:  2008-01-20       Impact factor: 91.245

2.  A nonsynonymous functional variant in integrin-alpha(M) (encoded by ITGAM) is associated with systemic lupus erythematosus.

Authors:  Swapan K Nath; Shizhong Han; Xana Kim-Howard; Jennifer A Kelly; Parvathi Viswanathan; Gary S Gilkeson; Wei Chen; Cheng Zhu; Rodger P McEver; Robert P Kimberly; Marta E Alarcón-Riquelme; Timothy J Vyse; Quan-Zhen Li; Edward K Wakeland; Joan T Merrill; Judith A James; Kenneth M Kaufman; Joel M Guthridge; John B Harley
Journal:  Nat Genet       Date:  2008-01-20       Impact factor: 38.330

3.  Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.

Authors:  John B Harley; Marta E Alarcón-Riquelme; Lindsey A Criswell; Chaim O Jacob; Robert P Kimberly; Kathy L Moser; Betty P Tsao; Timothy J Vyse; Carl D Langefeld; Swapan K Nath; Joel M Guthridge; Beth L Cobb; Daniel B Mirel; Miranda C Marion; Adrienne H Williams; Jasmin Divers; Wei Wang; Summer G Frank; Bahram Namjou; Stacey B Gabriel; Annette T Lee; Peter K Gregersen; Timothy W Behrens; Kimberly E Taylor; Michelle Fernando; Raphael Zidovetzki; Patrick M Gaffney; Jeffrey C Edberg; John D Rioux; Joshua O Ojwang; Judith A James; Joan T Merrill; Gary S Gilkeson; Michael F Seldin; Hong Yin; Emily C Baechler; Quan-Zhen Li; Edward K Wakeland; Gail R Bruner; Kenneth M Kaufman; Jennifer A Kelly
Journal:  Nat Genet       Date:  2008-01-20       Impact factor: 38.330

4.  Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus.

Authors:  Sergey V Kozyrev; Anna-Karin Abelson; Jerome Wojcik; Ammar Zaghlool; M V Prasad Linga Reddy; Elena Sanchez; Iva Gunnarsson; Elisabet Svenungsson; Gunnar Sturfelt; Andreas Jönsen; Lennart Truedsson; Bernardo A Pons-Estel; Torsten Witte; Sandra D'Alfonso; Nadia Barizzone; Nadia Barrizzone; Maria Giovanna Danieli; Carmen Gutierrez; Ana Suarez; Peter Junker; Helle Laustrup; Maria Francisca González-Escribano; Javier Martin; Hadi Abderrahim; Marta E Alarcón-Riquelme
Journal:  Nat Genet       Date:  2008-01-20       Impact factor: 38.330

5.  STAT4 and the risk of rheumatoid arthritis and systemic lupus erythematosus.

Authors:  Elaine F Remmers; Robert M Plenge; Annette T Lee; Robert R Graham; Geoffrey Hom; Timothy W Behrens; Paul I W de Bakker; Julie M Le; Hye-Soon Lee; Franak Batliwalla; Wentian Li; Seth L Masters; Matthew G Booty; John P Carulli; Leonid Padyukov; Lars Alfredsson; Lars Klareskog; Wei V Chen; Christopher I Amos; Lindsey A Criswell; Michael F Seldin; Daniel L Kastner; Peter K Gregersen
Journal:  N Engl J Med       Date:  2007-09-06       Impact factor: 91.245

6.  Comprehensive evaluation of the genetic variants of interferon regulatory factor 5 (IRF5) reveals a novel 5 bp length polymorphism as strong risk factor for systemic lupus erythematosus.

Authors:  Snaevar Sigurdsson; Harald H H Göring; Gudlaug Kristjansdottir; Lili Milani; Gunnel Nordmark; Johanna K Sandling; Maija-Leena Eloranta; Di Feng; Niquiche Sangster-Guity; Iva Gunnarsson; Elisabet Svenungsson; Gunnar Sturfelt; Andreas Jönsen; Lennart Truedsson; Betsy J Barnes; Gunnar Alm; Lars Rönnblom; Ann-Christine Syvänen
Journal:  Hum Mol Genet       Date:  2007-12-06       Impact factor: 6.150

7.  Genetic variation in the CRP promoter: association with systemic lupus erythematosus.

Authors:  Jeffrey C Edberg; Jianming Wu; Carl D Langefeld; Elizabeth E Brown; Miranda C Marion; Gerald McGwin; Michelle Petri; Rosalind Ramsey-Goldman; John D Reveille; Summer G Frank; Kenneth M Kaufman; John B Harley; Graciela S Alarcón; Robert P Kimberly
Journal:  Hum Mol Genet       Date:  2008-01-08       Impact factor: 6.150

8.  Polymorphism at the TNF superfamily gene TNFSF4 confers susceptibility to systemic lupus erythematosus.

Authors:  Deborah S Cunninghame Graham; Robert R Graham; Harinder Manku; Andrew K Wong; John C Whittaker; Patrick M Gaffney; Kathy L Moser; John D Rioux; David Altshuler; Timothy W Behrens; Timothy J Vyse
Journal:  Nat Genet       Date:  2007-12-02       Impact factor: 38.330

9.  Identification of novel susceptibility genes in childhood-onset systemic lupus erythematosus using a uniquely designed candidate gene pathway platform.

Authors:  Chaim O Jacob; Andreas Reiff; Don L Armstrong; Barry L Myones; Earl Silverman; Marisa Klein-Gitelman; Deborah McCurdy; Linda Wagner-Weiner; James J Nocton; Aaron Solomon; Raphael Zidovetzki
Journal:  Arthritis Rheum       Date:  2007-12

10.  Common variants within MECP2 confer risk of systemic lupus erythematosus.

Authors:  Amr H Sawalha; Ryan Webb; Shizhong Han; Jennifer A Kelly; Kenneth M Kaufman; Robert P Kimberly; Marta E Alarcón-Riquelme; Judith A James; Timothy J Vyse; Gary S Gilkeson; Chan-Bum Choi; R Hal Scofield; Sang-Cheol Bae; Swapan K Nath; John B Harley
Journal:  PLoS One       Date:  2008-03-05       Impact factor: 3.240

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  49 in total

1.  Lupus after kidney donation to an affected male relative.

Authors:  Edward G Clark; Greg Knoll; Ann Bugeja; Kevin D Burns; R Hal Scofield
Journal:  Transplantation       Date:  2015-04       Impact factor: 4.939

2.  Autoantibodies targeting glomerular annexin A2 identify patients with proliferative lupus nephritis.

Authors:  Dawn J Caster; Erik A Korte; Michael L Merchant; Jon B Klein; Daniel W Wilkey; Brad H Rovin; Dan J Birmingham; John B Harley; Beth L Cobb; Bahram Namjou; Kenneth R McLeish; David W Powell
Journal:  Proteomics Clin Appl       Date:  2015-06-12       Impact factor: 3.494

3.  Smoking is not associated with autoantibody production in systemic lupus erythematosus patients, unaffected first-degree relatives, nor healthy controls.

Authors:  K A Young; D R Terrell; J M Guthridge; D L Kamen; G S Gilkeson; D R Karp; M L Ishimori; M H Weisman; V M Holers; J B Harley; J M Norris; J A James
Journal:  Lupus       Date:  2014-01-21       Impact factor: 2.911

4.  Screening characteristics for enrichment of individuals at higher risk for transitioning to classified SLE.

Authors:  K A Young; M E Munroe; J M Guthridge; D L Kamen; G S Gilkensen; J B Harley; M H Weisman; D R Karp; D J Wallace; J A James; J M Norris
Journal:  Lupus       Date:  2019-03-07       Impact factor: 2.911

5.  Rare X Chromosome Abnormalities in Systemic Lupus Erythematosus and Sjögren's Syndrome.

Authors:  Rohan Sharma; Valerie M Harris; Joshua Cavett; Biji T Kurien; Ke Liu; Kristi A Koelsch; Anum Fayaaz; Kaustubh S Chaudhari; Lida Radfar; David Lewis; Donald U Stone; C Erick Kaufman; Shibo Li; Barbara Segal; Daniel J Wallace; Michael H Weisman; Swamy Venuturupalli; Jennifer A Kelly; Bernardo Pons-Estel; Roland Jonsson; Xianglan Lu; Jacques-Eric Gottenberg; Juan-Manuel Anaya; Deborah S Cunninghame-Graham; Andrew J W Huang; Michael T Brennan; Pamela Hughes; Ilias Alevizos; Corinne Miceli-Richard; Edward C Keystone; Vivian P Bykerk; Gideon Hirschfield; Gunnel Nordmark; Sara Magnusson Bucher; Per Eriksson; Roald Omdal; Nelson L Rhodus; Maureen Rischmueller; Michael Rohrer; Marie Wahren-Herlenius; Torsten Witte; Marta Alarcón-Riquelme; Xavier Mariette; Christopher J Lessard; John B Harley; Wan-Fai Ng; Astrid Rasmussen; Kathy L Sivils; R Hal Scofield
Journal:  Arthritis Rheumatol       Date:  2017-10-12       Impact factor: 10.995

6.  Role of Systemic Lupus Erythematosus Risk Variants With Opposing Functional Effects as a Driver of Hypomorphic Expression of TNIP1 and Other Genes Within a Three-Dimensional Chromatin Network.

Authors:  Satish Pasula; Kandice L Tessneer; Yao Fu; Jaanam Gopalakrishnan; Richard C Pelikan; Jennifer A Kelly; Graham B Wiley; Mandi M Wiley; Patrick M Gaffney
Journal:  Arthritis Rheumatol       Date:  2020-03-30       Impact factor: 10.995

7.  Sex chromosome aneuploidies among men with systemic lupus erythematosus.

Authors:  Skyler P Dillon; Biji T Kurien; Shibo Li; Gail R Bruner; Kenneth M Kaufman; John B Harley; Patrick M Gaffney; Daniel J Wallace; Michael H Weisman; R Hal Scofield
Journal:  J Autoimmun       Date:  2011-12-06       Impact factor: 7.094

8.  Rheumatic disease among Oklahoma tribal populations: a cross-sectional study.

Authors:  Jasmine R Gaddy; Evan S Vista; Julie M Robertson; Amy B Dedeke; Virginia C Roberts; Wendy S Klein; Jeremy H Levin; Fabio H Mota; Tina M Cooper; Gloria A Grim; Sohail Khan; Judith A James
Journal:  J Rheumatol       Date:  2012-08-15       Impact factor: 4.666

9.  Excess female siblings and male fetal loss in families with systemic lupus erythematosus.

Authors:  Rachna Aggarwal; Andrea L Sestak; Eliza F Chakravarty; John B Harley; R Hal Scofield
Journal:  J Rheumatol       Date:  2013-02-01       Impact factor: 4.666

10.  Association of two independent functional risk haplotypes in TNIP1 with systemic lupus erythematosus.

Authors:  Indra Adrianto; Shaofeng Wang; Graham B Wiley; Christopher J Lessard; Jennifer A Kelly; Adam J Adler; Stuart B Glenn; Adrienne H Williams; Julie T Ziegler; Mary E Comeau; Miranda C Marion; Benjamin E Wakeland; Chaoying Liang; Kenneth M Kaufman; Joel M Guthridge; Marta E Alarcón-Riquelme; Graciela S Alarcón; Juan-Manuel Anaya; Sang-Cheol Bae; Jae-Hoon Kim; Young Bin Joo; Susan A Boackle; Elizabeth E Brown; Michelle A Petri; Rosalind Ramsey-Goldman; John D Reveille; Luis M Vilá; Lindsey A Criswell; Jeffrey C Edberg; Barry I Freedman; Gary S Gilkeson; Chaim O Jacob; Judith A James; Diane L Kamen; Robert P Kimberly; Javier Martín; Joan T Merrill; Timothy B Niewold; Bernardo A Pons-Estel; R Hal Scofield; Anne M Stevens; Betty P Tsao; Timothy J Vyse; Carl D Langefeld; John B Harley; Edward K Wakeland; Kathy L Moser; Courtney G Montgomery; Patrick M Gaffney
Journal:  Arthritis Rheum       Date:  2012-11
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