Literature DB >> 26457517

Structures of exoglucanase from Clostridium cellulovorans: cellotetraose binding and cleavage.

Li Chu Tsai1, Imamaddin Amiraslanov2, Hung Ren Chen1, Yun Wen Chen2, Hsiao Lin Lee3, Po Huang Liang3, Yen Chywan Liaw2.   

Abstract

Exoglucanase/cellobiohydrolase (EC 3.2.1.176) hydrolyzes a β-1,4-glycosidic bond from the reducing end of cellulose and releases cellobiose as the major product. Three complex crystal structures of the glycosyl hydrolase 48 (GH48) cellobiohydrolase S (ExgS) from Clostridium cellulovorans with cellobiose, cellotetraose and triethylene glycol molecules were solved. The product cellobiose occupies subsites +1 and +2 in the open active-site cleft of the enzyme-cellotetraose complex structure, indicating an enzymatic hydrolysis function. Moreover, three triethylene glycol molecules and one pentaethylene glycol molecule are located at active-site subsites -2 to -6 in the structure of the ExgS-triethylene glycol complex shown here. Modelling of glucose into subsite -1 in the active site of the ExgS-cellobiose structure revealed that Glu50 acts as a proton donor and Asp222 plays a nucleophilic role.

Entities:  

Keywords:  (α/α)6 fold; Clostridium cellulovorans; GH48 exoglucanase; glycoside hydrolase; oligosaccharide binding and cleavage; reducing end of cellulose; β-1,4-glycosidic bonds

Mesh:

Substances:

Year:  2015        PMID: 26457517      PMCID: PMC4601590          DOI: 10.1107/S2053230X15015915

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  29 in total

Review 1.  Glycosidase mechanisms.

Authors:  Andrea Vasella; Gideon J Davies; Matthias Böhm
Journal:  Curr Opin Chem Biol       Date:  2002-10       Impact factor: 8.822

2.  Structural basis for ligand binding and processivity in cellobiohydrolase Cel6A from Humicola insolens.

Authors:  Annabelle Varrot; Torben P Frandsen; Ingemar von Ossowski; Viviane Boyer; Sylvain Cottaz; Hugues Driguez; Martin Schülein; Gideon J Davies
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

3.  Atomic (0.94 A) resolution structure of an inverting glycosidase in complex with substrate.

Authors:  Diego M A Guérin; Marie-Bernard Lascombe; Marcelo Costabel; Hélène Souchon; Victor Lamzin; Pierre Béguin; Pedro M Alzari
Journal:  J Mol Biol       Date:  2002-03-08       Impact factor: 5.469

4.  Streptococcus pneumoniae endohexosaminidase D, structural and mechanistic insight into substrate-assisted catalysis in family 85 glycoside hydrolases.

Authors:  D Wade Abbott; Matthew S Macauley; David J Vocadlo; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2009-01-30       Impact factor: 5.157

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 6.  The Clostridium cellulovorans cellulosome.

Authors:  R H Doi; M Goldstein; S Hashida; J S Park; M Takagi
Journal:  Crit Rev Microbiol       Date:  1994       Impact factor: 7.624

7.  The Clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner.

Authors:  Benedita A Pinheiro; Mark R Proctor; Carlos Martinez-Fleites; José A M Prates; Victoria A Money; Gideon J Davies; Edward A Bayer; Carlos M G A Fontesm; Henri-Pierre Fierobe; Harry J Gilbert
Journal:  J Biol Chem       Date:  2008-04-28       Impact factor: 5.157

8.  Crystal structures of Melanocarpus albomyces cellobiohydrolase Cel7B in complex with cello-oligomers show high flexibility in the substrate binding.

Authors:  Tarja Parkkinen; Anu Koivula; Jari Vehmaanperä; Juha Rouvinen
Journal:  Protein Sci       Date:  2008-05-21       Impact factor: 6.725

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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