Literature DB >> 26444714

International Barcode of Life: Evolution of a global research community.

Sarah J Adamowicz1,1.   

Abstract

The 6th International Barcode of Life Conference (Guelph, Canada, 18-21 August 2015), themed Barcodes to Biomes, showcases the latest developments in DNA barcoding research and its diverse applications. The meeting also provides a venue for a global research community to share ideas and to initiate collaborations. All plenary and contributed abstracts are being published as an open-access special issue of Genome. Here, I use a comparison with the 3rd Conference (Mexico City, 2009) to highlight 10 recent and emerging trends that are apparent among the contributed abstracts. One of the outstanding trends is the rising proportion of abstracts that focus upon multiple socio-economically important applications of DNA barcoding, including studies of agricultural pests, quarantine and invasive species, wildlife forensics, disease vectors, biomonitoring of ecosystem health, and marketplace surveys evaluating the authenticity of seafood products and medicinal plants. Other key movements include the use of barcoding and metabarcoding approaches for dietary analyses-and for studies of food webs spanning three or more trophic levels-as well as the spread of next-generation sequencing methods in multiple contexts. In combination with the rising taxonomic and geographic scope of many barcoding iniatives, these developments suggest that several important questions in biology are becoming tractable. "What is this specimen on an agricultural shipment?", "Who eats whom in this whole food web?", and even "How many species are there?" are questions that may be answered in time periods ranging from a few years to one or a few decades. The next phases of DNA barcoding may expand yet further into prediction of community shifts with climate change and improved management of biological resources.

Keywords:  DNA barcoding; applications socioéconomiques; codage à barres chez les plantes; codage à barres de l’ADN; conference; congrès; ecology; ethnobotanique; ethnobotany genomics; evolution; génomique; marker selection; market substitution; next-generation sequencing; plant barcoding; research trends; socio-economic applications; substitution de produits; sélection de marqueurs; séquençage de nouvelle génération; tendances en recherche; écologie; évolution

Mesh:

Year:  2015        PMID: 26444714     DOI: 10.1139/gen-2015-0094

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  11 in total

1.  From writing to reading the encyclopedia of life.

Authors:  Paul D N Hebert; Peter M Hollingsworth; Mehrdad Hajibabaei
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-09-05       Impact factor: 6.237

2.  Comparison of the novel dipstick DNA extraction technique with two established techniques for use in biological barcoding.

Authors:  Avrie Martello; Brett Lambert; Clifton Johnston; Jacob Cutler; Christof F Stumpf
Journal:  Mol Biol Rep       Date:  2019-09-26       Impact factor: 2.316

3.  Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve.

Authors:  Angela C Telfer; Monica R Young; Jenna Quinn; Kate Perez; Crystal N Sobel; Jayme E Sones; Valerie Levesque-Beaudin; Rachael Derbyshire; Jose Fernandez-Triana; Rodolphe Rougerie; Abinah Thevanayagam; Adrian Boskovic; Alex V Borisenko; Alex Cadel; Allison Brown; Anais Pages; Anibal H Castillo; Annegret Nicolai; Barb Mockford Glenn Mockford; Belén Bukowski; Bill Wilson; Brock Trojahn; Carole Ann Lacroix; Chris Brimblecombe; Christoper Hay; Christmas Ho; Claudia Steinke; Connor P Warne; Cristina Garrido Cortes; Daniel Engelking; Danielle Wright; Dario A Lijtmaer; David Gascoigne; David Hernandez Martich; Derek Morningstar; Dirk Neumann; Dirk Steinke; Donna DeBruin Marco DeBruin; Dylan Dobias; Elizabeth Sears; Ellen Richard; Emily Damstra; Evgeny V Zakharov; Frederic Laberge; Gemma E Collins; Gergin A Blagoev; Gerrie Grainge; Graham Ansell; Greg Meredith; Ian Hogg; Jaclyn McKeown; Janet Topan; Jason Bracey; Jerry Guenther; Jesse Sills-Gilligan; Joseph Addesi; Joshua Persi; Kara K S Layton; Kareina D'Souza; Kencho Dorji; Kevin Grundy; Kirsti Nghidinwa; Kylee Ronnenberg; Kyung Min Lee; Linxi Xie; Liuqiong Lu; Lyubomir Penev; Mailyn Gonzalez; Margaret E Rosati; Mari Kekkonen; Maria Kuzmina; Marianne Iskandar; Marko Mutanen; Maryam Fatahi; Mikko Pentinsaari; Miriam Bauman; Nadya Nikolova; Natalia V Ivanova; Nathaniel Jones; Nimalka Weerasuriya; Norman Monkhouse; Pablo D Lavinia; Paul Jannetta; Priscila E Hanisch; R Troy McMullin; Rafael Ojeda Flores; Raphaëlle Mouttet; Reid Vender; Renee N Labbee; Robert Forsyth; Rob Lauder; Ross Dickson; Ruth Kroft; Scott E Miller; Shannon MacDonald; Sishir Panthi; Stephanie Pedersen; Stephanie Sobek-Swant; Suresh Naik; Tatsiana Lipinskaya; Thanushi Eagalle; Thibaud Decaëns; Thibault Kosuth; Thomas Braukmann; Tom Woodcock; Tomas Roslin; Tony Zammit; Victoria Campbell; Vlad Dinca; Vlada Peneva; Paul D N Hebert; Jeremy R deWaard
Journal:  Biodivers Data J       Date:  2015-08-30

4.  Merging FT-IR and NGS for simultaneous phenotypic and genotypic identification of pathogenic Candida species.

Authors:  Claudia Colabella; Laura Corte; Luca Roscini; Volha Shapaval; Achim Kohler; Valeria Tafintseva; Carlo Tascini; Gianluigi Cardinali
Journal:  PLoS One       Date:  2017-12-04       Impact factor: 3.240

5.  Nanopore sequencing: An enrichment-free alternative to mitochondrial DNA sequencing.

Authors:  Roxanne R Zascavage; Kelcie Thorson; John V Planz
Journal:  Electrophoresis       Date:  2018-12-13       Impact factor: 3.535

6.  Oomycete metabarcoding reveals the presence of Lagenidium spp. in phytotelmata.

Authors:  Paula Leoro-Garzon; Andrew J Gonedes; Isabel E Olivera; Aurélien Tartar
Journal:  PeerJ       Date:  2019-10-14       Impact factor: 2.984

7.  Reliable genomic strategies for species classification of plant genetic resources.

Authors:  Artur van Bemmelen van der Plaat; Rob van Treuren; Theo J L van Hintum
Journal:  BMC Bioinformatics       Date:  2021-03-31       Impact factor: 3.169

8.  Phylogenetic signal of sub-arctic beetle communities.

Authors:  Samantha E Majoros; Sarah J Adamowicz
Journal:  Ecol Evol       Date:  2022-02-16       Impact factor: 2.912

9.  Plant DNA Barcode as a Tool for Root Identification in Hypogea: The Case of the Etruscan Tombs of Tarquinia (Central Italy).

Authors:  Daniela Isola; Flavia Bartoli; Simone Langone; Simona Ceschin; Laura Zucconi; Giulia Caneva
Journal:  Plants (Basel)       Date:  2021-06-03

10.  Three-gene PCR and high-resolution melting analysis for differentiating vertebrate species mitochondrial DNA for biodiversity research and complementing forensic surveillance.

Authors:  Daniel O Ouso; Moses Y Otiende; Maamun M Jeneby; Joseph W Oundo; Joel L Bargul; Scott E Miller; Lillian Wambua; Jandouwe Villinger
Journal:  Sci Rep       Date:  2020-03-16       Impact factor: 4.379

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