| Literature DB >> 26421428 |
Xiaokun Hu1, Jing Wang1, Yubin Li1, Yizi Wang1, Chenhui Ding1, Yanhong Zeng1, Yanwen Xu1, Canquan Zhou1.
Abstract
PURPOSE: The aim of this study was to explore factors contribute to the success of PGD cycles for monogenic diseases.Entities:
Mesh:
Year: 2015 PMID: 26421428 PMCID: PMC4589384 DOI: 10.1371/journal.pone.0139613
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primer sequences and products sizes for detecting α- and β-thalassemia.
| Primers | Primer sequence (5’-3’) | Product size (bp) |
|---|---|---|
| S1 | GTGTTCTCAGTATTGGAGGGAA | |
| S2 | FAM-GACACGCTTCCAATACGCTTA | Normal:S1 + S2:282 |
| S3 | HEX-CTACTGCAGCCTTGAACTCC | Abnormal:S1 + S3:178 |
| A | GGCCAATCTACTCCCAGGAG | |
| B | ACATCAAGGGTCCCATAGAC | A + B:597 |
| C | ATAACAGTGAATTTCTGG | |
| D | AAAGCGAACTTAGTGATAC | C + D:362 |
The number of STR for each disease and mutation testing methods.
| Disease | Position of causal gene | Number of STR | Methods of mutation testing |
|---|---|---|---|
| SMA | 5q13 | 11 | Fluorescent PCR of SMN1 exon7 |
| DMD | Xp21 | 11 | Fluorescent PCR of different exons of DMD gene |
| X-CGD | Xp21 | 16 | 1.Fluorescent PCR:CYBB exon 8 |
| 2.Sequencing |
SMA: spinal muscular atrophy; DMD: Duchennne muscular dystrophy; X-CGD: X-linked chronic granulomatous disease.
The information of STR for SMA.
| STR locus | Heterozygosity | Forward primer sequence (5’-3’) | Reverse primer sequence (5’-3’) | Size range (bp) | Fluorescent label |
|---|---|---|---|---|---|
| D5S435 | 0.68 | TGGTCCTAAGATAGGGTTGAT | CAAGAGCACAGTTTGGAGTGAG | 150 | FAM |
| D5S629 | 0.82 | ACTCGGGAGGCTGAGA | CCGGTTTGTTCCTGTGA | 240 | HEX |
| D5S1417 | 0.79 | TTTCAACCCTGAGACATTCAACT | GTGTTAGAATCACCTGGGAAGTG | 150 | TAMRA |
| D5S1556 | 0.98 | ATTTACTTTTCCAAGGGGGAGG | CATGTTGCTTAGGCCTCGTCT | 105 | HEX |
| D5S610 | 0.86 | GGCAGTGTCCTAAAATCTTTTG | CCTAAACTGAACTTTCAAAGCTG | 130 | FAM |
| D5S637 | 0.72 | TGAATCTCAGGGAGTTGTGAA | CTGCATTTAATACTGCAATGAA | 245 | TAMRA |
| D5S557 | 0.46 | AAGTGAAACACAGAGGTTGAC | GGTGAATGTTTGATGACCCTA | 165 | FAM |
| D5S351 | 0.74 | AAGACCAGTCTATGGCAACAC | GTGAGACCGAAAATGCTGATG | 215 | HEX |
| D5S681 | 0.68 | ATCTCTGAGGCTGCACAT | GTCTTTGATGAGATACCG | 145 | FAM |
| 5’-MAP1B | 0.76 | TCCTTCTTCCAAAACCAGGGTGAAGCCTC | AAATTTCTAGGATGCTTGCGGGATCTCTTC | 135 | FAM |
| D5S641 | 0.76 | AGTTGTGTATTGGAGAATGTTATCA | AGGGACAGTCCACTTCCAGT | 265 | FAM |
The information of STR for DMD.
| STR locus | Heterozygosity | Forward primer sequence (5’-3’) | Reverse primer sequence (5’-3’) | Size range (bp) | Fluorescent label |
|---|---|---|---|---|---|
| 5’DYSII | 0.78 | TAGCTAAAAATGTATGAGTA | AATAGTGTTTTCCTAAGGG | 90 | FAM |
| STRMP[ | ACTCACAAGGTTCCAGATATCTAC | CTATCTTTTTGCATTCCAGTTGAG | 335 | FAM | |
| STR2[ | CAGCCAGAATATTGACATTACTAC | TCTAGATCCAACTGAAGAGCCTAC | 210 | FAM | |
| STR4[ | GCTTTGTCAGAACTTTGTCACCTG | AACTAAGAGTTACATTCCTGTAAG | 115 | FAM | |
| STR44 | 0.87 | TCCAACATTGGAAATCACATTTCAA | TCATCACAAATAGATGTTTCACAG | 180 | FAM |
| STR45 | 0.88 | GAGGCTATAATTCTTTAACTTTGGC | CTCTTTCCCTCTTTATTCATGTTAC | 175 | HEX |
| STR49 | 0.93 | CGTTTACCAGCTCAAAATCTCAAC | CATATGATACGATTCGTGTTTTGC | 240 | HEX |
| STR50 | 0.71 | AAGGTTCCTCCAGTAACAGATTTGG | TATGCTACATAGTATGTCCTCAGAC | 240 | FAM |
| STR62[ | CACCTATGTTCGCCATCTAGGACA | CAACCATAGTGTTATAAGGCAGAG | 399 | FAM | |
| STR79GT2 [ | CCATAGCTTTAGATGTTGTCTGTG | GTTTGAGCAGCCTAGCAGATGTCC | 240 | FAM | |
| 3’CA | 0.46 | GAAAGATTGTAAACTAAAGTGTGC | GGATGCAAAACAATGCGCTGCCTC | 130 | FAM |
The information of STR for X-CGD.
| STR locus | Heterozygosity | Forward primer sequence (5’-3’) | Reverse primer sequence (5’-3’) | Size range (bp) | Fluorescent label |
|---|---|---|---|---|---|
| DXS1214 | 0.88 | TAGAACCCAAATGACAACCA | AAGATAGCAGGCAACAATAAGA | 208 | FAM |
| DXS8089 | 0.90 | GGGTGAAATTCCATCACAAA | ACAAATGCAGATGTACAAAAAATA | 170 | FAM |
| DXS8113 | 0.80 | CCTCTACATAGGCACATGC | CCAAAGGAGTTATTTGTCACCT | 230 | FAM |
| DXS1069 | 0.82 | AGCCTAACCCACATAACAGC | AGCTACTATATTNACCTTGGTCTTG | 250 | FAM |
| DXS8085 | 0.78 | TCAAAGAGGTTTTGCCAC | AGATAAAGACATCCTGCCTAGTTC | 155 | FAM |
| DXS1055 | 0.82 | ATGGGATACACTGTTCTGGG | TTAAACAATGCACAACTGGG | 90 | FAM |
| DXS2507 | 0.69 | GAATCGCTTGAACCCAGAG | AAGGTGACATGAGACTGTGTG | 255 | HEX |
| DXS8032 | 0.83 | CATTTTATTTTGCTTTGTATTTGGC | CTCCTAGAACAGTACCTGACACG | 180 | HEX |
| DXS1207 | 0.69 | TATTTGCACTTTAACCCTTGTC | CTTCTTTATATCTTATGGGACCACT | 170 | TAMRA |
| DXS1216 | 0.81 | TGCCAACAGTGCTAAGGAT | GGGTAGAAGACTTNCCCA | 245 | HEX |
| DXS8014 | 0.80 | GGCAAAGTTGTCAGAGGC | CAAATGGCTTGTTCCAGTT | 270 | FAM |
| DXS8111 | 0.81 | GTAGGAACAATAAGTTATGCCTTGC | AGATTAAAGCCCTGGCG | 165 | FAM |
| DXS8010 | 0.81 | CTGGCCCAAAGGTTAATTTT | AAGGTGGAAGGTCCACTG | 160 | TAMRA |
| DXS8060 | 0.88 | CACAGCCATGTCCTAGCATA | ACCAAACTTGTTAGTGACCTGA | 135 | FAM |
| DXS1221 | 0.76 | CTTGTGAATTTATTTCAGTTATTG | CCTTAGAAGTGGCCCAG | 155 | HEX |
| DXS1226 | 0.91 | CTAAACCCATCTGNCCTC | TTTCCAGCAACTACCTTTCAT | 210 | HEX |
Clinical characteristics of PGD cycles of monogenic diseases.
| Median | Range | |
|---|---|---|
| Female age(year) | 32.0 | 23.0–41.0 |
| BMI(kg/m2) | 20.7 | 16.4–28.7 |
| Basal FSH(IU/L) | 5.6 | 3.2–19.9 |
| Basal LH(IU/L) | 3.0 | 1.0–11.2 |
| Total Gn (IU) | 2418.5 | 900–5250 |
| HCG day E2 (ng/ml) | 2792.0 | 103.0–5000.0 |
| No. of Oocytes | 14 | 3–27 |
| No. of MII oocytes | 11.5 | 3–25 |
| NBE | 8 | 3–20 |
| NAE | 7 | 2–20 |
| NDE | 7 | 2–20 |
| NUE | 3 | 1–13 |
| NTE | 2 | 1–3 |
| NFE | 0 | 0–10 |
| NGE | 3 | 1–12 |
NBE: Number of Biopsied embryos; NAE: Number of Analysed embryos; NDE: Number of Diagnosed embryos; NUE: Number of Unaffected embryos; NTE: Number of Transfered embryos; NFE: Number of Frozen embryos; NGE: Number of Good quality embryos; NS; not statistically significant.
Comparison between pregnant and non-pregnant group of PGD cycles of monogenic diseases.
| Non-pregnant N = 105 | Pregnant N = 79 |
| |
|---|---|---|---|
| Female age(year) | 32.0(23.0–41.0) | 31.0(23.0–40.0) | NS |
| BMI(kg/m2) | 20.5(17.3–28.7) | 20.9(16.4–27.0) | NS |
| Basal FSH(IU/L) | 5.6(3.5–9.4) | 5.7(3.2–19.9) | NS |
| Basal LH(IU/L) | 3.0(1.3–7.9) | 3.0(1.0–11.2) | NS |
| Total Gn (IU) | 2475.0 (1050.0–5250.0) | 2250.0 (900.0–4903.0) | NS |
| HCG day E2(ng/ml) | 2706.0(103.0–5000.0) | 3128.0(241.0–5000.0) | NS |
| No. of Oocytes | 14(3–27) | 13(4–26) | NS |
| No. of MII oocytes | 12(3–25) | 11(4–24) | NS |
| NBE | 8(3–20) | 9(4–18) | NS |
| NAE | 7(2–20) | 8(3–16) | NS |
| NDE | 7(2–20) | 8(3–16) | NS |
| NUE | 3(1–10) | 4(1–13) | 0.03 |
| NTE | 2(1–3) | 2(1–3) | NS |
| NFE | 0(0–6) | 0(0–10) | NS |
| NGE | 2(1–8) | 3(1–12) | NS |
NBE: Number of Biopsied embryos; NAE: Number of Analysed embryos; NDE: Number of Diagnosed embryos; NUE: Number of Unaffected embryos; NTE: Number of Transfered embryos; NFE: Number of Frozen embryos; NGE: Number of Good quality embryos; NS; not statistically significant.