Literature DB >> 26409275

Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform.

Angela M Starks1, Enrique Avilés2, Daniela M Cirillo3, Claudia M Denkinger4, David L Dolinger4, Claudia Emerson5, Jim Gallarda6, Debra Hanna2, Peter S Kim7, Richard Liwski2, Paolo Miotto3, Marco Schito2, Matteo Zignol8.   

Abstract

Continued progress in addressing challenges associated with detection and management of tuberculosis requires new diagnostic tools. These tools must be able to provide rapid and accurate information for detecting resistance to guide selection of the treatment regimen for each patient. To achieve this goal, globally representative genotypic, phenotypic, and clinical data are needed in a standardized and curated data platform. A global partnership of academic institutions, public health agencies, and nongovernmental organizations has been established to develop a tuberculosis relational sequencing data platform (ReSeqTB) that seeks to increase understanding of the genetic basis of resistance by correlating molecular data with results from drug susceptibility testing and, optimally, associated patient outcomes. These data will inform development of new diagnostics, facilitate clinical decision making, and improve surveillance for drug resistance. ReSeqTB offers an opportunity for collaboration to achieve improved patient outcomes and to advance efforts to prevent and control this devastating disease. Published by Oxford University Press on behalf of the Infectious Diseases Society of America 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Entities:  

Keywords:  Mycobacterium tuberculosis; database; drug resistance

Mesh:

Substances:

Year:  2015        PMID: 26409275      PMCID: PMC4583571          DOI: 10.1093/cid/civ610

Source DB:  PubMed          Journal:  Clin Infect Dis        ISSN: 1058-4838            Impact factor:   9.079


  20 in total

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3.  Nosocomial transmission of extensively drug-resistant tuberculosis in a rural hospital in South Africa.

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Journal:  J Infect Dis       Date:  2012-11-19       Impact factor: 5.226

Review 4.  Rationale and uses of a public HIV drug-resistance database.

Authors:  Robert W Shafer
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5.  Human immunodeficiency virus reverse transcriptase and protease sequence database.

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6.  Worldwide emergence of extensively drug-resistant tuberculosis.

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Journal:  Emerg Infect Dis       Date:  2007-03       Impact factor: 6.883

7.  Added value of whole-genome sequencing for management of highly drug-resistant TB.

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9.  Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients.

Authors:  Matthias Merker; Thomas A Kohl; Andreas Roetzer; Leona Truebe; Elvira Richter; Sabine Rüsch-Gerdes; Lanfranco Fattorini; Marco R Oggioni; Helen Cox; Francis Varaine; Stefan Niemann
Journal:  PLoS One       Date:  2013-12-06       Impact factor: 3.240

10.  MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis.

Authors:  Jean-Pierre Flandrois; Gérard Lina; Oana Dumitrescu
Journal:  BMC Bioinformatics       Date:  2014-04-14       Impact factor: 3.169

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  31 in total

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Review 2.  Mycobacterial biomaterials and resources for researchers.

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Journal:  Pathog Dis       Date:  2018-06-01       Impact factor: 3.166

3.  Connectivity of diagnostic technologies: improving surveillance and accelerating tuberculosis elimination.

Authors:  E Andre; C Isaacs; D Affolabi; R Alagna; D Brockmann; B C de Jong; E Cambau; G Churchyard; T Cohen; M Delmee; J-C Delvenne; M Farhat; A Habib; P Holme; S Keshavjee; A Khan; P Lightfoot; D Moore; Y Moreno; Y Mundade; M Pai; S Patel; A U Nyaruhirira; L E C Rocha; J Takle; A Trébucq; J Creswell; C Boehme
Journal:  Int J Tuberc Lung Dis       Date:  2016-08       Impact factor: 2.373

Review 4.  Methodological and Clinical Aspects of the Molecular Epidemiology of Mycobacterium tuberculosis and Other Mycobacteria.

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5.  Mutation in luxR Family Transcriptional Regulator Rv0890c Is Not a Marker of Linezolid Resistance.

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Review 7.  Recent advances in tuberculosis diagnostics in resource-limited settings.

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8.  Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.

Authors:  Joseph Shea; Tanya A Halse; Pascal Lapierre; Matthew Shudt; Donna Kohlerschmidt; Patrick Van Roey; Ronald Limberger; Jill Taylor; Vincent Escuyer; Kimberlee A Musser
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9.  Resistance-Conferring Mutations on Whole-Genome Sequencing of Fluoroquinolone-resistant and -Susceptible Mycobacterium tuberculosis Isolates: A Proposed Threshold for Identifying Resistance.

Authors:  Fernanda Maruri; Yan Guo; Amondrea Blackman; Yuri F van der Heijden; Peter F Rebeiro; Timothy R Sterling
Journal:  Clin Infect Dis       Date:  2021-06-01       Impact factor: 9.079

10.  Predicting Antimicrobial Resistance Using Partial Genome Alignments.

Authors:  D Aytan-Aktug; M Nguyen; P T L C Clausen; R L Stevens; F M Aarestrup; O Lund; J J Davis
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