Literature DB >> 29846561

Mycobacterial biomaterials and resources for researchers.

Manzour Hernando Hazbón1,2, Leen Rigouts3, Marco Schito4, Matthew Ezewudo4, Takuji Kudo5, Takashi Itoh5, Moriya Ohkuma5, Katalin Kiss6, Linhuan Wu7, Juncai Ma7, Moriyuki Hamada8, Michael Strong9, Max Salfinger10, Charles L Daley10, Jerry A Nick10, Jung-Sook Lee11, Nalin Rastogi12, David Couvin12, Raquel Hurtado-Ortiz13, Chantal Bizet14, Anita Suresh15, Timothy Rodwell15, Audrey Albertini15, Karen A Lacourciere16, Ana Deheer-Graham17, Sarah Alexander17, Julie E Russell17, Rebecca Bradford1,2, Marco A Riojas1,2.   

Abstract

There are many resources available to mycobacterial researchers, including culture collections around the world that distribute biomaterials to the general scientific community, genomic and clinical databases, and powerful bioinformatics tools. However, many of these resources may be unknown to the research community. This review article aims to summarize and publicize many of these resources, thus strengthening the quality and reproducibility of mycobacterial research by providing the scientific community access to authenticated and quality-controlled biomaterials and a wealth of information, analytical tools and research opportunities.

Mesh：

Year:  2018        PMID： 29846561      PMCID： PMC6251690          DOI： 10.1093/femspd/fty042

Source DB:  PubMed          Journal:  Pathog Dis        ISSN： 2049-632X            Impact factor:   3.166


  25 in total

1.  SpolSimilaritySearch - A web tool to compare and search similarities between spoligotypes of Mycobacterium tuberculosis complex.

Authors:  David Couvin; Thierry Zozio; Nalin Rastogi
Journal:  Tuberculosis (Edinb)       Date:  2017-04-20       Impact factor: 3.131

2.  Spacer-Based Macroarrays for CRISPR Genotyping.

Authors:  Igor Mokrousov; Nalin Rastogi
Journal:  Methods Mol Biol       Date:  2015

3.  The TDR Tuberculosis Strain Bank: a resource for basic science, tool development and diagnostic services.

Authors:  V Vincent; L Rigouts; E Nduwamahoro; B Holmes; J Cunningham; M Guillerm; C-M Nathanson; F Moussy; B De Jong; F Portaels; A Ramsay
Journal:  Int J Tuberc Lung Dis       Date:  2012-01       Impact factor: 2.373

4.  Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis.

Authors:  Philip Supply; Caroline Allix; Sarah Lesjean; Mara Cardoso-Oelemann; Sabine Rüsch-Gerdes; Eve Willery; Evgueni Savine; Petra de Haas; Henk van Deutekom; Solvig Roring; Pablo Bifani; Natalia Kurepina; Barry Kreiswirth; Christophe Sola; Nalin Rastogi; Vincent Vatin; Maria Cristina Gutierrez; Maryse Fauville; Stefan Niemann; Robin Skuce; Kristin Kremer; Camille Locht; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2006-09-27       Impact factor: 5.948

5.  Genome sequencing of Mycobacterium abscessus isolates from patients in the united states and comparisons to globally diverse clinical strains.

Authors:  Rebecca M Davidson; Nabeeh A Hasan; Paul R Reynolds; Sarah Totten; Benjamin Garcia; Adrah Levin; Preveen Ramamoorthy; Leonid Heifets; Charles L Daley; Michael Strong
Journal:  J Clin Microbiol       Date:  2014-07-23       Impact factor: 5.948

Review 6.  Nontuberculous mycobacteria in cystic fibrosis: Updates and the path forward.

Authors:  Stacey L Martiniano; Rebecca M Davidson; Jerry A Nick
Journal:  Pediatr Pulmonol       Date:  2017-09-07

7.  Characterization of genome-wide ordered sequence-tagged Mycobacterium mutant libraries by Cartesian Pooling-Coordinate Sequencing.

Authors:  Kristof Vandewalle; Nele Festjens; Evelyn Plets; Marnik Vuylsteke; Yvan Saeys; Nico Callewaert
Journal:  Nat Commun       Date:  2015-05-11       Impact factor: 14.919

8.  Multiple Introductions and Recent Spread of the Emerging Human Pathogen Mycobacterium ulcerans across Africa.

Authors:  Koen Vandelannoote; Conor J Meehan; Miriam Eddyani; Dissou Affolabi; Delphin Mavinga Phanzu; Sara Eyangoh; Kurt Jordaens; Françoise Portaels; Kirstie Mangas; Torsten Seemann; Laurent Marsollier; Estelle Marion; Annick Chauty; Jordi Landier; Arnaud Fontanet; Herwig Leirs; Timothy P Stinear; Bouke C de Jong
Journal:  Genome Biol Evol       Date:  2017-03-01       Impact factor: 3.416

9.  Genetic sequencing for surveillance of drug resistance in tuberculosis in highly endemic countries: a multi-country population-based surveillance study.

Authors:  Matteo Zignol; Andrea Maurizio Cabibbe; Anna S Dean; Philippe Glaziou; Natavan Alikhanova; Cecilia Ama; Sönke Andres; Anna Barbova; Angeli Borbe-Reyes; Daniel P Chin; Daniela Maria Cirillo; Charlotte Colvin; Andrei Dadu; Andries Dreyer; Michèle Driesen; Christopher Gilpin; Rumina Hasan; Zahra Hasan; Sven Hoffner; Alamdar Hussain; Nazir Ismail; S M Mostofa Kamal; Faisal Masood Khanzada; Michael Kimerling; Thomas Andreas Kohl; Mikael Mansjö; Paolo Miotto; Ya Diul Mukadi; Lindiwe Mvusi; Stefan Niemann; Shaheed V Omar; Leen Rigouts; Marco Schito; Ivita Sela; Mehriban Seyfaddinova; Girts Skenders; Alena Skrahina; Sabira Tahseen; William A Wells; Alexander Zhurilo; Karin Weyer; Katherine Floyd; Mario C Raviglione
Journal:  Lancet Infect Dis       Date:  2018-03-21       Impact factor: 25.071

10.  SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads.

Authors:  Eryu Xia; Yik-Ying Teo; Rick Twee-Hee Ong
Journal:  Genome Med       Date:  2016-02-17       Impact factor: 11.117
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  3 in total

Review 1.  The Many Hosts of Mycobacteria 8 (MHM8): A conference report.

Authors:  Michelle H Larsen; Karen Lacourciere; Tina M Parker; Alison Kraigsley; Jacqueline M Achkar; Linda B Adams; Kathryn M Dupnik; Luanne Hall-Stoodley; Travis Hartman; Carly Kanipe; Sherry L Kurtz; Michele A Miller; Liliana C M Salvador; John S Spencer; Richard T Robinson
Journal:  Tuberculosis (Edinb)       Date:  2020-02-11       Impact factor: 3.131

Review 2.  Advances in actinomycete research: an ActinoBase review of 2019.

Authors:  Samuel M M Prudence; Emily Addington; Laia Castaño-Espriu; David R Mark; Linamaría Pintor-Escobar; Alicia H Russell; Thomas C McLean
Journal:  Microbiology (Reading)       Date:  2020-06-19       Impact factor: 2.777

3.  A Mycobacterial Systems Resource for the Research Community.

Authors:  T A Gray; J T Wade; J A Judd; J Canestrari; R Clark; A Joseph; P Lapierre; E Lasek-Nesselquist; M Mir; M Palumbo; C Smith; M Stone; A Upadhyay; S E Wirth; R M Dedrick; C G Meier; D A Russell; A Dills; E Dove; J Kester; I D Wolf; J Zhu; E R Rubin; S Fortune; G F Hatfull; K M Derbyshire
Journal:  mBio       Date:  2021-03-02       Impact factor: 7.867
  3 in total

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