| Literature DB >> 26402063 |
Valentina Manstretta1, Vittorio Rossi1.
Abstract
Fusarium graminearum is a predominant component of the Fusarium head blight (FHB) complex of small grain cereals. Ascosporic infection plays a relevant role in the spread of the disease. A 3-year study was conducted on ascospore discharge. To separate the effect of weather on discharge from the effect of weather on the production and maturation of ascospores in perithecia, discharge was quantified with a volumetric spore sampler placed near maize stalk residues bearing perithecia with mature ascospores; the residues therefore served as a continuous source of ascospores. Ascospores were discharged from perithecia on 70% of 154 days. Rain (R) and vapor pressure deficit (VPD) were the variables that most affected ascospore discharge, with 84% of total discharges occurring on days with R≥0.2 mm or VPD≤11 hPa, and with 70% of total ascospore discharge peaks (≥ 30 ascospores/m3 air per day) occurring on days with R≥0.2 mm and VPD≤6.35 hPa. An ROC analysis using these criteria for R and VPD provided True Positive Proportion (TPP) = 0.84 and True Negative Proportion (TNP) = 0.63 for occurrence of ascospore discharge, and TPP = 0.70 and TNP = 0.89 for occurrence of peaks. Globally, 68 ascospores (2.5% of the total ascospores sampled) were trapped on the 17 days when no ascospores were erroneously predicted. When a discharge occurred, the numbers of F. graminearum ascospores sampled were predicted by a multiple regression model with R2 = 0.68. This model, which includes average and maximum temperature and VPD as predicting variables, slightly underestimated the real data and especially ascospore peaks. Numbers of ascospores in peaks were best predicted by wetness duration of the previous day, minimum temperature, and VPD, with R2 = 0.71. These results will help refine the epidemiological models used as decision aids in FHB management programs.Entities:
Mesh:
Year: 2015 PMID: 26402063 PMCID: PMC4581667 DOI: 10.1371/journal.pone.0138860
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Weather data during the sampling periods.
Air temperature (T), relative humidity (RH), and rainfall at the University of Piacenza (North Italy) during the periods in 2012 (A), 2013 (B), and 2014 (C) when Fusarium graminearum ascospores were sampled from the air above maize stalk residues bearing mature perithecia.
Fig 2Numbers of Fusarium graminearum ascospores sampled daily.
Ascospores were sampled from the air above maize stalk residues bearing mature perithecia at the University of Piacenza (North Italy) in 2012 (A), 2013 (B), and 2014 (C). * indicates days in which no ascospores were erroneously predicted according to the discharge criteria R ≥ 2 mm/day or VPD ≤ 11 hPa.
Weather data during periods with and without discharge of Fusarium graminearum ascospores, and with and without peaks of discharge, in North Italy in 2012 to 2014.
| Ascospore discharge | Ascospore peak | |||||||
|---|---|---|---|---|---|---|---|---|
| Weather Variable | Group | Average | s.e. |
| Average | s.e. |
|
|
|
| 0 | 21.2 | 0.54 | <0.001 | 19.7 | 0.38 | <0.001 | <0.001 |
| 1 | 18.2 | 0.41 | 15.9 | 0.56 | ||||
|
| 0 | 14.0 | 0.55 | 0.046 | 13.4 | 0.34 | 0.027 | 0.129 |
| 1 | 12.7 | 0.35 | 11.9 | 0.52 | ||||
|
| 0 | 28.2 | 0.61 | <0.001 | 26.2 | 0.45 | <0.001 | <0.001 |
| 1 | 23.9 | 0.52 | 20.3 | 0.84 | ||||
|
| 0 | 58.1 | 1.29 | <0.001 | 64.1 | 0.95 | <0.001 | <0.001 |
| 1 | 70.2 | 1.08 | 78.4 | 1.88 | ||||
|
| 0 | 36.7 | 1.34 | <0.001 | 42.6 | 1.07 | <0.001 | <0.001 |
| 1 | 49.4 | 1.41 | 59.8 | 3.15 | ||||
|
| 0 | 81.1 | 1.37 | <0.001 | 85.4 | 0.76 | <0.001 | <0.001 |
| 1 | 89.4 | 0.68 | 93.9 | 0.84 | ||||
|
| 0 | 0.9 | 0.31 | <0.001 | 2.6 | 0.37 | <0.001 | 0.039 |
| 1 | 5.0 | 0.52 | 9.2 | 1.03 | ||||
|
| 0 | 0.7 | 0.27 | <0.001 | 1.9 | 0.33 | <0.001 | <0.001 |
| 1 | 4.0 | 0.54 | 8.0 | 1.33 | ||||
|
| 0 | 12.5 | 0.59 | <0.001 | 10.2 | 0.43 | <0.001 | 0.001 |
| 1 | 7.9 | 0.46 | 4.7 | 0.52 | ||||
|
| 0 | 0.3 | 0.22 | 0.022 | 1.3 | 0.41 | 0.021 | <0.001 |
| 1 | 3.0 | 0.76 | 6.8 | 2.24 | ||||
1 Tav, Tmin, Tmax = average, min, and max daily temperature; RHav, RHmin, RHmax = average, min, and max daily relative humidity; WDt = total wetness duration; RH90 = hours with RH > 90%; VPD = vapor pressure deficit; Rt = total rain.
2 0 = days with no ascospore discharge or no ascospore peaks; 1 = days with ascospore discharge or ascospore peak.
3 Ascospores were sampled with a volumetric spore sampler from the air above maize stalk residues bearing mature F. graminearum perithecia.
4 Peaks are defined as days with ≥ 30 ascospores / m3 air.
5 Probability level of the t-test for differences between the two ascospore groups (0 = no, 1 = yes).
6 Probability level of the t-test of differences between presence and peak of ascospores.
Comparison between observed and predicted discharges and peaks of Fusarium graminearum ascospores in North Italy in 2012 to 2014.
Predictions were based on rain alone or rain and vapor pressure deficit.
| Proportion | Overall accuracy | Likelyhood ratio | Prior probability | Posterior probability | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ascospore | Predicting variable | TPP | FNP | FPP | TNP | LR(+) | LR(-) | O+ | O- | P+/O+ | P-/O- | P+/O- | P-/O+ | |
|
| Rain | 0.42 | 0.58 | 0.09 | 0.91 | 0.56 | 4.79 | 0.639 | 0.70 | 0.30 | 0.92 | 0.42 | 0.08 | 0.58 |
|
| Rain | 0.81 | 0.19 | 0.21 | 0.79 | 0.79 | 3.83 | 0.235 | 0.18 | 0.82 | 0.45 | 0.96 | 0.55 | 0.04 |
|
| Rain, VPD | 0.84 | 0.16 | 0.37 | 0.63 | 0.78 | 2.28 | 0.250 | 0.70 | 0.30 | 0.84 | 0.73 | 0.16 | 0.27 |
|
| Rain, VPD | 0.70 | 0.30 | 0.11 | 0.89 | 0.86 | 6.38 | 0.333 | 0.18 | 0.82 | 0.58 | 0.94 | 0.42 | 0.06 |
1 Ascospores were sampled with a volumetric spore sampler from the air above maize stalk residues bearing mature F. graminearum perithecia.
2 Rain ≥ 0.2 mm/day; vapor pressure deficit VPD ≤ 11 hPa for discharges; VPD ≤ 6.35 hPa for peaks.
3 TPP = True Positive Proportion (sensitivity); FNP = False Negative Proportion; FPP = False Positive Proportion; TNP = True Negative Proportion (specificity)
4 Peaks are defined as days with ≥ 30 ascospores / m3 air.
Characteristics of the ROC curves obtained using weather data as predictors of discharge and peaks of Fusarium graminearum ascospores in North Italy in 2012 to 2014.
| Ascospore discharge | Ascospore peak | |||
|---|---|---|---|---|
| Predicting variable | AUROC | s.e. | AUROC | s.e. |
|
| 0.717 | 0.043 | 0.774 | 0.043 |
|
| 0.591 | 0.049 | 0.615 | 0.052 |
|
| 0.748 | 0.041 | 0.823 | 0.042 |
|
| 0.190 | 0.035 | 0.149 | 0.033 |
|
| 0.233 | 0.038 | 0.184 | 0.041 |
|
| 0.228 | 0.041 | 0.172 | 0.041 |
|
| 0.307 | 0.043 | 0.191 | 0.047 |
|
| 0.225 | 0.038 | 0.129 | 0.031 |
|
| 0.799 | 0.036 | 0.849 | 0.036 |
|
| 0.336 | 0.044 | 0.184 | 0.048 |
1 Tav, Tmin, Tmax = average, min, and max daily temperature; RHav, RHmin, RHmax = average, min, and max daily relative humidity; WDt = total wetness duration; RH90 = hours with RH > 90%; VPD = vapor pressure deficit; Rt = total rain.
2 Ascospores were sampled with a volumetric spore sampler from the air above maize stalk residues bearing mature F. graminearum perithecia.
3 Peaks are defined as days with ≥ 30 ascospores / m3 air.
4 Area under the ROC curve.
Fig 3ROC curve.
Sensitivity vs. 1-Specificity (ROC curve) in predicting discharge (line) and peaks (dotted line) of Fusarium graminearum ascospores as affected by different cut-off points for the number of hours per day with vapor pressure deficit (hPa) ≤ the cut-off point at the University of Piacenza (North Italy) in 2012 to 2014. Points and numbers inside the plot are the best cut-off points.
Fig 4Weather data during sampling and number of ascospores sampled in specific periods.
Hourly air temperature (T), relative humidity (RH), rain, wetness duration (WD), vapor pressure deficit (VPD), and numbers of Fusarium graminearum ascospores sampled from the air above maize stalk residues bearing mature perithecia at the University of Piacenza (North Italy) in 2013. Panels show three different period of 48 hours: from 12.00 of 10 May to 11.00 of 12 May (A), from 12.00 of 15 May to 11.00 of 16 May (B) and from 00.00 of 9 June to 23.00 of 10 June (C).
Correlation coefficients between daily numbers of airborne Fusarium graminearum ascospores and weather data registered during the day of ascospore trapping (Day i) and the day before trapping (Day i-1) in North Italy in 2012 to 2014.
| Day i | Day i-1 | |||
|---|---|---|---|---|
| Weather variable | r |
| r |
|
|
| -0.491 | <0.001 | -0.346 | <0.001 |
|
| -0.258 | 0.001 | -0.150 | 0.064 |
|
| -0.559 | <0.001 | -0.419 | <0.001 |
|
| 0.640 | <0.001 | 0.493 | <0.001 |
|
| 0.596 | <0.001 | 0.490 | <0.001 |
|
| 0.545 | <0.001 | 0.371 | <0.001 |
|
| 0.610 | <0.001 | 0.423 | <0.001 |
|
| 0.532 | <0.001 | 0.372 | <0.001 |
|
| -0.605 | <0.001 | -0.442 | <0.001 |
|
| 0.299 | <0.001 | 0.234 | 0.004 |
1 Tav, Tmin, Tmax = average, min, and max daily temperature; RHav, RHmin, RHmax = average, min, and max daily relative humidity; WDt = total wetness duration; RH90 = hours with RH > 90%; VPD = vapor pressure deficit; Rt = total rain.
2 Pearson correlation coefficient (n = 154); ascospores were sampled with a volumetric spore sampler from the air above maize stalk residues bearing mature F. graminearum perithecia; ascospore numbers were transformed by the function ln(x+1) for the analysis.
Parameters and statistics of the regression models describing the relationships between weather data and daily numbers of airborne Fusarium graminearum ascospores sampled in North Italy in 2012 to 2014.
| Data set | Weather variables | Parameters | s.e. |
| R | s.e. | ||
|---|---|---|---|---|---|---|---|---|
|
| X0 | Intercept | β0 | 2.093 | 0.552 | <0.001 | 0.682 | 0.87 |
| X1 | Asci(0,1) | β1 | 1.977 | 0.171 | <0.001 | |||
| X2 | Tavi | β2 | 0.181 | 0.067 | 0.008 | |||
| X3 | Tmaxi | β3 | -0.184 | 0.063 | 0.004 | |||
| X4 | VPDi | β4 | -0.061 | 0.016 | 0.027 | |||
|
| X0 | Intercept | β0 | 3.474 | 0.304 | <0.001 | 0.710 | 0.29 |
| X1 | Tmini | β1 | 0.040 | 0.021 | 0.044 | |||
| X2 | VPDi | β2 | -0.05 | 0.021 | 0.026 | |||
| X3 | WDti-1 | β3 | 0.063 | 0.012 | <0.001 | |||
1 In the first data set, all sampling days were considered, whether or not ascospores were discharged from perithecia (n = 154); in the second data set, only days with ascospore peaks, i.e., ≥ 30 ascospores / m3 air per day, were considered (n = 27).
2 Tav, Tmin, Tmax = average, min, and max daily temperature; WDt = total wetness duration; VPD = vapor pressure deficit; Asc(0,1) = dycotomic variables with 0 and 1 being no or yes ascospores, respectively.
3 Parameters of the following regression model: Y = β0 + β1X1 + … + βnXn; Y = natural logarithm of ascospore numbers. Ascospores were sampled with a volumetric spore sampler from the air above maize stalk residues bearing mature F. graminearum perithecia; ascospore numbers were transformed by using the function ln(x+1) for the analysis.
4 Standard error of the parameters.
5 Standard error of the estimates.
Fig 5Model prediction.
Numbers of Fusarium graminearum ascospores predicted by model (1) (see Table 5) based on average air temperature (Tav), maximum air temperature (Tmax), and vapor pressure deficit (VPD). Average relative humidity (RHav) is shown as a component for calculating VPD. Predicted ascospore numbers are expressed as ln(x+1).
Fig 6Model prediction in the sampling periods.
Numbers of Fusarium graminearum ascospores predicted daily by model (1) (dotted line) and model (2) (points) (see Table 5) and observed (line) at the University of Piacenza (North Italy) in 2012 (A), 2013 (B), and 2014 (C). Ascospores were sampled with a volumetric spore sampler from the air above maize stalk residues bearing mature perithecia; ascospore numbers are expressed as ln(x+1).
Fig 7Box-plot of the residuals.
Box-plot of the residuals (observed—predicted) for numbers of Fusarium graminearum ascospores predicted daily by model (1) and model (2) (see Table 5).