Literature DB >> 26376462

Textual inference for eligibility criteria resolution in clinical trials.

Chaitanya Shivade1, Courtney Hebert2, Marcelo Lopetegui3, Marie-Catherine de Marneffe4, Eric Fosler-Lussier5, Albert M Lai2.   

Abstract

Clinical trials are essential for determining whether new interventions are effective. In order to determine the eligibility of patients to enroll into these trials, clinical trial coordinators often perform a manual review of clinical notes in the electronic health record of patients. This is a very time-consuming and exhausting task. Efforts in this process can be expedited if these coordinators are directed toward specific parts of the text that are relevant for eligibility determination. In this study, we describe the creation of a dataset that can be used to evaluate automated methods capable of identifying sentences in a note that are relevant for screening a patient's eligibility in clinical trials. Using this dataset, we also present results for four simple methods in natural language processing that can be used to automate this task. We found that this is a challenging task (maximum F-score=26.25), but it is a promising direction for further research.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Clinical trials; Electronic health records; Natural language processing; Textual inference

Mesh:

Year:  2015        PMID: 26376462      PMCID: PMC4978353          DOI: 10.1016/j.jbi.2015.09.008

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  25 in total

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Authors:  A R Aronson
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2.  A practical method for transforming free-text eligibility criteria into computable criteria.

Authors:  Samson W Tu; Mor Peleg; Simona Carini; Michael Bobak; Jessica Ross; Daniel Rubin; Ida Sim
Journal:  J Biomed Inform       Date:  2010-09-17       Impact factor: 6.317

3.  Measures of semantic similarity and relatedness in the biomedical domain.

Authors:  Ted Pedersen; Serguei V S Pakhomov; Siddharth Patwardhan; Christopher G Chute
Journal:  J Biomed Inform       Date:  2006-06-10       Impact factor: 6.317

4.  Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms.

Authors: 
Journal:  Neural Comput       Date:  1998-09-15       Impact factor: 2.026

5.  Letter: Grading of angina pectoris.

Authors:  L Campeau
Journal:  Circulation       Date:  1976-09       Impact factor: 29.690

6.  UMLS-Interface and UMLS-Similarity : open source software for measuring paths and semantic similarity.

Authors:  Bridget T McInnes; Ted Pedersen; Serguei V S Pakhomov
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

7.  Inter-annotator reliability of medical events, coreferences and temporal relations in clinical narratives by annotators with varying levels of clinical expertise.

Authors:  Preethi Raghavan; Eric Fosler-Lussier; Albert M Lai
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

8.  Analysis of eligibility criteria complexity in clinical trials.

Authors:  Jessica Ross; Samson Tu; Simona Carini; Ida Sim
Journal:  Summit Transl Bioinform       Date:  2010-03-01

9.  Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis.

Authors:  Stephen T Wu; Hongfang Liu; Dingcheng Li; Cui Tao; Mark A Musen; Christopher G Chute; Nigam H Shah
Journal:  J Am Med Inform Assoc       Date:  2012-04-04       Impact factor: 4.497

10.  Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department.

Authors:  Yizhao Ni; Stephanie Kennebeck; Judith W Dexheimer; Constance M McAneney; Huaxiu Tang; Todd Lingren; Qi Li; Haijun Zhai; Imre Solti
Journal:  J Am Med Inform Assoc       Date:  2014-07-16       Impact factor: 4.497

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  12 in total

1.  Automatic data source identification for clinical trial eligibility criteria resolution.

Authors:  Chaitanya Shivade; Courtney Hebert; Kelly Regan; Eric Fosler-Lussier; Albert M Lai
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  Clinical Natural Language Processing in 2015: Leveraging the Variety of Texts of Clinical Interest.

Authors:  A Névéol; P Zweigenbaum
Journal:  Yearb Med Inform       Date:  2016-11-10

Review 3.  Aspiring to Unintended Consequences of Natural Language Processing: A Review of Recent Developments in Clinical and Consumer-Generated Text Processing.

Authors:  D Demner-Fushman; N Elhadad
Journal:  Yearb Med Inform       Date:  2016-11-10

4.  Automatic prediction of coronary artery disease from clinical narratives.

Authors:  Kevin Buchan; Michele Filannino; Özlem Uzuner
Journal:  J Biomed Inform       Date:  2017-06-27       Impact factor: 6.317

5.  Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks.

Authors:  Özlem Uzuner; Amber Stubbs
Journal:  J Biomed Inform       Date:  2015-10-24       Impact factor: 6.317

Review 6.  Clinical Research Informatics: Supporting the Research Study Lifecycle.

Authors:  S B Johnson
Journal:  Yearb Med Inform       Date:  2017-09-11

7.  Shared-Task Worklists Improve Clinical Trial Recruitment Workflow in an Academic Emergency Department.

Authors:  Kevin S Naceanceno; Stacey L House; Phillip V Asaro
Journal:  Appl Clin Inform       Date:  2021-04-07       Impact factor: 2.342

8.  Automatic trial eligibility surveillance based on unstructured clinical data.

Authors:  Stéphane M Meystre; Paul M Heider; Youngjun Kim; Daniel B Aruch; Carolyn D Britten
Journal:  Int J Med Inform       Date:  2019-05-23       Impact factor: 4.730

9.  A Curated Cancer Clinical Outcomes Database (C3OD) for accelerating patient recruitment in cancer clinical trials.

Authors:  Dinesh Pal Mudaranthakam; Jeffrey Thompson; Jinxiang Hu; Dong Pei; Shanthan Reddy Chintala; Michele Park; Brooke L Fridley; Byron Gajewski; Devin C Koestler; Matthew S Mayo
Journal:  JAMIA Open       Date:  2018-07-10

10.  Cohort Selection for Clinical Trials From Longitudinal Patient Records: Text Mining Approach.

Authors:  Irena Spasic; Dominik Krzeminski; Padraig Corcoran; Alexander Balinsky
Journal:  JMIR Med Inform       Date:  2019-10-31
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