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Literature DB >> 26515500

Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks.

Özlem Uzuner¹, Amber Stubbs².

Abstract

Entities: Disease Gene Species

Mesh：

Year: 2015 PMID： 26515500 PMCID： PMC4978169 DOI： 10.1016/j.jbi.2015.10.007

Source DB: PubMed Journal: J Biomed Inform ISSN： 1532-0464 Impact factor: 6.317

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37 in total

Review 1. Evaluating the state of the art in coreference resolution for electronic medical records.

Authors: Ozlem Uzuner; Andreea Bodnari; Shuying Shen; Tyler Forbush; John Pestian; Brett R South
Journal: J Am Med Inform Assoc Date: 2012-02-24 Impact factor: 4.497

2. Extracting medication information from clinical text.

Authors: Ozlem Uzuner; Imre Solti; Eithon Cadag
Journal: J Am Med Inform Assoc Date: 2010 Sep-Oct Impact factor: 4.497

3. Annotating risk factors for heart disease in clinical narratives for diabetic patients.

Authors: Amber Stubbs; Özlem Uzuner
Journal: J Biomed Inform Date: 2015-05-21 Impact factor: 6.317

4. Expression of the splicing factor gene SFRS10 is reduced in human obesity and contributes to enhanced lipogenesis.

Authors: Jussi Pihlajamäki; Carles Lerin; Paula Itkonen; Tanner Boes; Thomas Floss; Joshua Schroeder; Farrell Dearie; Sarah Crunkhorn; Furkan Burak; Josep C Jimenez-Chillaron; Tiina Kuulasmaa; Pekka Miettinen; Peter J Park; Imad Nasser; Zhenwen Zhao; Zhaiyi Zhang; Yan Xu; Wolfgang Wurst; Hongmei Ren; Andrew J Morris; Stefan Stamm; Allison B Goldfine; Markku Laakso; Mary Elizabeth Patti
Journal: Cell Metab Date: 2011-08-03 Impact factor: 27.287

Review 5. Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1.

Authors: Amber Stubbs; Christopher Kotfila; Özlem Uzuner
Journal: J Biomed Inform Date: 2015-07-28 Impact factor: 6.317

6. Mining heart disease risk factors in clinical text with named entity recognition and distributional semantic models.

Authors: Jay Urbain
Journal: J Biomed Inform Date: 2015-08-21 Impact factor: 6.317

7. Identifying patient smoking status from medical discharge records.

Authors: Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal: J Am Med Inform Assoc Date: 2007-10-18 Impact factor: 4.497

Review 8. Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors: Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal: J Am Med Inform Assoc Date: 2013-04-05 Impact factor: 4.497

9. Automatic detection of protected health information from clinic narratives.

Authors: Hui Yang; Jonathan M Garibaldi
Journal: J Biomed Inform Date: 2015-07-29 Impact factor: 6.317

10. Network-based analysis of affected biological processes in type 2 diabetes models.

Authors: Manway Liu; Arthur Liberzon; Sek Won Kong; Weil R Lai; Peter J Park; Isaac S Kohane; Simon Kasif
Journal: PLoS Genet Date: 2007-06 Impact factor: 5.917

15 in total

1. Comparison of UMLS terminologies to identify risk of heart disease using clinical notes.

Authors: Chaitanya Shivade; Pranav Malewadkar; Eric Fosler-Lussier; Albert M Lai
Journal: J Biomed Inform Date: 2015-09-12 Impact factor: 6.317

2. A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases.

Authors: Christopher Kotfila; Özlem Uzuner
Journal: J Biomed Inform Date: 2015-08-01 Impact factor: 6.317

3. The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.

Authors: Kirk Roberts; Sonya E Shooshan; Laritza Rodriguez; Swapna Abhyankar; Halil Kilicoglu; Dina Demner-Fushman
Journal: J Biomed Inform Date: 2015-06-26 Impact factor: 6.317

4. An Automated Feature Engineering for Digital Rectal Examination Documentation using Natural Language Processing.

Authors: Selen Bozkurt; Jung In Park; Kathleen Mary Kan; Michelle Ferrari; Daniel L Rubin; James D Brooks; Tina Hernandez-Boussard
Journal: AMIA Annu Symp Proc Date: 2018-12-05

Review 5. Aspiring to Unintended Consequences of Natural Language Processing: A Review of Recent Developments in Clinical and Consumer-Generated Text Processing.

Authors: D Demner-Fushman; N Elhadad
Journal: Yearb Med Inform Date: 2016-11-10