Literature DB >> 26365496

The long tail and rare disease research: the impact of next-generation sequencing for rare Mendelian disorders.

Tony Shen1, Ariel Lee1, Carol Shen1, C Jimmy Lin1.   

Abstract

There are an estimated 6000-8000 rare Mendelian diseases that collectively affect 30 million individuals in the United States. The low incidence and prevalence of these diseases present significant challenges to improving diagnostics and treatments. Next-generation sequencing (NGS) technologies have revolutionized research of rare diseases. This article will first comment on the effectiveness of NGS through the lens of long-tailed economics. We then provide an overview of recent developments and challenges of NGS-based research on rare diseases. As the quality of NGS studies improve and the cost of sequencing decreases, NGS will continue to make a significant impact on the study of rare diseases moving forward.

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Year:  2015        PMID: 26365496      PMCID: PMC6863629          DOI: 10.1017/S0016672315000166

Source DB:  PubMed          Journal:  Genet Res (Camb)        ISSN: 0016-6723            Impact factor:   1.588


  83 in total

1.  Personalized medicine: Bring clinical standards to human-genetics research.

Authors:  Gholson J Lyon
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

2.  De novo nonsense mutations in ASXL1 cause Bohring-Opitz syndrome.

Authors:  Alexander Hoischen; Bregje W M van Bon; Benjamín Rodríguez-Santiago; Christian Gilissen; Lisenka E L M Vissers; Petra de Vries; Irene Janssen; Bart van Lier; Rob Hastings; Sarah F Smithson; Ruth Newbury-Ecob; Susanne Kjaergaard; Judith Goodship; Ruth McGowan; Deborah Bartholdi; Anita Rauch; Maarit Peippo; Jan M Cobben; Dagmar Wieczorek; Gabriele Gillessen-Kaesbach; Joris A Veltman; Han G Brunner; Bert B B A de Vries
Journal:  Nat Genet       Date:  2011-06-26       Impact factor: 38.330

Review 3.  Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine.

Authors:  Huixiao Hong; Wenqian Zhang; Jie Shen; Zhenqiang Su; Baitang Ning; Tao Han; Roger Perkins; Leming Shi; Weida Tong
Journal:  Sci China Life Sci       Date:  2013-02-08       Impact factor: 6.038

4.  Overcoming the obstacles to returning genomic research results.

Authors:  Michael Lee; Jimmy Cheng-Ho Lin
Journal:  Genet Res (Camb)       Date:  2013-04-17       Impact factor: 1.588

5.  The real cost of sequencing: higher than you think!

Authors:  Andrea Sboner; Xinmeng Jasmine Mu; Dov Greenbaum; Raymond K Auerbach; Mark B Gerstein
Journal:  Genome Biol       Date:  2011-08-25       Impact factor: 13.583

6.  Identification of an HMGB3 frameshift mutation in a family with an X-linked colobomatous microphthalmia syndrome using whole-genome and X-exome sequencing.

Authors:  Alan F Scott; David W Mohr; Laura M Kasch; Jill A Barton; Raquel Pittiglio; Roxann Ingersoll; Brian Craig; Beth A Marosy; Kimberly F Doheny; William C Bromley; Thomas H Roderick; Nicolas Chassaing; Patrick Calvas; Shreya S Prabhu; Ethylin Wang Jabs
Journal:  JAMA Ophthalmol       Date:  2014-10       Impact factor: 7.389

7.  Genetic diagnosis by whole exome capture and massively parallel DNA sequencing.

Authors:  Murim Choi; Ute I Scholl; Weizhen Ji; Tiewen Liu; Irina R Tikhonova; Paul Zumbo; Ahmet Nayir; Ayşin Bakkaloğlu; Seza Ozen; Sami Sanjad; Carol Nelson-Williams; Anita Farhi; Shrikant Mane; Richard P Lifton
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-27       Impact factor: 11.205

8.  Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory.

Authors:  Getiria Onsongo; Jesse Erdmann; Michael D Spears; John Chilton; Kenneth B Beckman; Adam Hauge; Sophia Yohe; Matthew Schomaker; Matthew Bower; Kevin A T Silverstein; Bharat Thyagarajan
Journal:  BMC Res Notes       Date:  2014-05-23

9.  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

Authors:  Robert C Green; Jonathan S Berg; Wayne W Grody; Sarah S Kalia; Bruce R Korf; Christa L Martin; Amy L McGuire; Robert L Nussbaum; Julianne M O'Daniel; Kelly E Ormond; Heidi L Rehm; Michael S Watson; Marc S Williams; Leslie G Biesecker
Journal:  Genet Med       Date:  2013-06-20       Impact factor: 8.822

10.  Decoding long nanopore sequencing reads of natural DNA.

Authors:  Andrew H Laszlo; Ian M Derrington; Brian C Ross; Henry Brinkerhoff; Andrew Adey; Ian C Nova; Jonathan M Craig; Kyle W Langford; Jenny Mae Samson; Riza Daza; Kenji Doering; Jay Shendure; Jens H Gundlach
Journal:  Nat Biotechnol       Date:  2014-06-25       Impact factor: 54.908

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  10 in total

1.  Drugs for rare disorders.

Authors:  Serge Cremers; Jeffrey K Aronson
Journal:  Br J Clin Pharmacol       Date:  2017-06-27       Impact factor: 4.335

2.  Industrializing rare disease therapy discovery and development.

Authors:  Sean Ekins
Journal:  Nat Biotechnol       Date:  2017-02-08       Impact factor: 54.908

Review 3.  Neurodevelopmental Genetic Diseases Associated With Microdeletions and Microduplications of Chromosome 17p13.3.

Authors:  Sara M Blazejewski; Sarah A Bennison; Trevor H Smith; Kazuhito Toyo-Oka
Journal:  Front Genet       Date:  2018-03-23       Impact factor: 4.599

4.  Clinical utility in infants with suspected monogenic conditions through next-generation sequencing.

Authors:  Sha Hong; Li Wang; Dongying Zhao; Yonghong Zhang; Yan Chen; Jintong Tan; Lili Liang; Tianwen Zhu
Journal:  Mol Genet Genomic Med       Date:  2019-04-09       Impact factor: 2.183

5.  RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants.

Authors:  Jana Marie Schwarz; Daniela Hombach; Sebastian Köhler; David N Cooper; Markus Schuelke; Dominik Seelow
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

6.  The future of genomics in Ireland - focus on genomics for health.

Authors:  Cathal Seoighe; Adrian P Bracken; Patrick Buckley; Peter Doran; Robert Green; Sandra Healy; David Kavanagh; Elaine Kenny; Mark Lawler; Maeve Lowery; Derek Morris; Darrin Morrissey; James J O'Byrne; Denis Shields; Owen Smith; Charles A Steward; Brian Sweeney; Walter Kolch
Journal:  HRB Open Res       Date:  2020-12-04

7.  Finding commonalities in rare diseases through the undiagnosed diseases network.

Authors:  Josephine Yates; Alba Gutiérrez-Sacristán; Vianney Jouhet; Kimberly LeBlanc; Cecilia Esteves; Thomas N DeSain; Nick Benik; Jason Stedman; Nathan Palmer; Guillaume Mellon; Isaac Kohane; Paul Avillach
Journal:  J Am Med Inform Assoc       Date:  2021-07-30       Impact factor: 4.497

Review 8.  Epigenetic disorders: Lessons from the animals-animal models in chromatinopathies.

Authors:  Elisabetta Di Fede; Paolo Grazioli; Antonella Lettieri; Chiara Parodi; Silvia Castiglioni; Esi Taci; Elisa Adele Colombo; Silvia Ancona; Alberto Priori; Cristina Gervasini; Valentina Massa
Journal:  Front Cell Dev Biol       Date:  2022-09-26

9.  Whole-Genome Sequencing of a Canine Family Trio Reveals a FAM83G Variant Associated with Hereditary Footpad Hyperkeratosis.

Authors:  Shumaila Sayyab; Agnese Viluma; Kerstin Bergvall; Emma Brunberg; Vidhya Jagannathan; Tosso Leeb; Göran Andersson; Tomas F Bergström
Journal:  G3 (Bethesda)       Date:  2016-01-08       Impact factor: 3.154

10.  Agreement and Reliability Analysis of Machine Learning Scaling and Wireless Monitoring in the Assessment of Acute Proximal Weakness by Experts and Non-Experts: A Feasibility Study.

Authors:  Eunjeong Park; Kijeong Lee; Taehwa Han; Hyo Suk Nam
Journal:  J Pers Med       Date:  2022-01-01
  10 in total

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