Literature DB >> 26356916

Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular Datasets.

Samuel Gratzl, Nils Gehlenborg, Alexander Lex, Hanspeter Pfister, Marc Streit.   

Abstract

Answering questions about complex issues often requires analysts to take into account information contained in multiple interconnected datasets. A common strategy in analyzing and visualizing large and heterogeneous data is dividing it into meaningful subsets. Interesting subsets can then be selected and the associated data and the relationships between the subsets visualized. However, neither the extraction and manipulation nor the comparison of subsets is well supported by state-of-the-art techniques. In this paper we present Domino, a novel multiform visualization technique for effectively representing subsets and the relationships between them. By providing comprehensive tools to arrange, combine, and extract subsets, Domino allows users to create both common visualization techniques and advanced visualizations tailored to specific use cases. In addition to the novel technique, we present an implementation that enables analysts to manage the wide range of options that our approach offers. Innovative interactive features such as placeholders and live previews support rapid creation of complex analysis setups. We introduce the technique and the implementation using a simple example and demonstrate scalability and effectiveness in a use case from the field of cancer genomics.

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Year:  2014        PMID: 26356916      PMCID: PMC4719182          DOI: 10.1109/TVCG.2014.2346260

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  17 in total

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Journal:  IEEE Trans Vis Comput Graph       Date:  2011-12       Impact factor: 4.579

2.  VisBricks: multiform visualization of large, inhomogeneous data.

Authors:  Alexander Lex; Hans-Jörg Schulz; Marc Streit; Christian Partl; Dieter Schmalstieg
Journal:  IEEE Trans Vis Comput Graph       Date:  2011-12       Impact factor: 4.579

3.  Comparative analysis of multidimensional, quantitative data.

Authors:  Alexander Lex; Marc Streit; Christian Partl; Karl Kashofer; Dieter Schmalstieg
Journal:  IEEE Trans Vis Comput Graph       Date:  2010 Nov-Dec       Impact factor: 4.579

Review 4.  A practical guide to understanding Kaplan-Meier curves.

Authors:  Jason T Rich; J Gail Neely; Randal C Paniello; Courtney C J Voelker; Brian Nussenbaum; Eric W Wang
Journal:  Otolaryngol Head Neck Surg       Date:  2010-09       Impact factor: 3.497

5.  Parallel sets: interactive exploration and visual analysis of categorical data.

Authors:  Robert Kosara; Fabian Bendix; Helwig Hauser
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Jul-Aug       Impact factor: 4.579

6.  Network visualization by semantic substrates.

Authors:  Ben Shneiderman; Aleks Aris
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Sep-Oct       Impact factor: 4.579

7.  VisLink: revealing relationships amongst visualizations.

Authors:  Christopher Collins; Sheelagh Carpendale
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

8.  Scattering points in parallel coordinates.

Authors:  Xiaoru Yuan; Peihong Guo; He Xiao; Hong Zhou; Huamin Qu
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

9.  Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.

Authors:  Roel G W Verhaak; Katherine A Hoadley; Elizabeth Purdom; Victoria Wang; Yuan Qi; Matthew D Wilkerson; C Ryan Miller; Li Ding; Todd Golub; Jill P Mesirov; Gabriele Alexe; Michael Lawrence; Michael O'Kelly; Pablo Tamayo; Barbara A Weir; Stacey Gabriel; Wendy Winckler; Supriya Gupta; Lakshmi Jakkula; Heidi S Feiler; J Graeme Hodgson; C David James; Jann N Sarkaria; Cameron Brennan; Ari Kahn; Paul T Spellman; Richard K Wilson; Terence P Speed; Joe W Gray; Matthew Meyerson; Gad Getz; Charles M Perou; D Neil Hayes
Journal:  Cancer Cell       Date:  2010-01-19       Impact factor: 31.743

10.  Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Authors: 
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

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  4 in total

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Journal:  Brief Bioinform       Date:  2017-11-01       Impact factor: 11.622

2.  MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection.

Authors:  Chen He; Luana Micallef; Zia-Ur-Rehman Tanoli; Samuel Kaski; Tero Aittokallio; Giulio Jacucci
Journal:  BMC Bioinformatics       Date:  2017-09-13       Impact factor: 3.169

3.  OncoThreads: visualization of large-scale longitudinal cancer molecular data.

Authors:  Theresa A Harbig; Sabrina Nusrat; Tali Mazor; Qianwen Wang; Alexander Thomson; Hans Bitter; Ethan Cerami; Nils Gehlenborg
Journal:  Bioinformatics       Date:  2021-07-12       Impact factor: 6.937

4.  Interactive visual exploration and refinement of cluster assignments.

Authors:  Michael Kern; Alexander Lex; Nils Gehlenborg; Chris R Johnson
Journal:  BMC Bioinformatics       Date:  2017-09-12       Impact factor: 3.169

  4 in total

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