Literature DB >> 26356902

ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery.

Christian Partl, Alexander Lex, Marc Streit, Hendrik Strobelt, Anne-Mai Wassermann, Hanspeter Pfister, Dieter Schmalstieg.   

Abstract

Large scale data analysis is nowadays a crucial part of drug discovery. Biologists and chemists need to quickly explore and evaluate potentially effective yet safe compounds based on many datasets that are in relationship with each other. However, there is a lack of tools that support them in these processes. To remedy this, we developed ConTour, an interactive visual analytics technique that enables the exploration of these complex, multi-relational datasets. At its core ConTour lists all items of each dataset in a column. Relationships between the columns are revealed through interaction: selecting one or multiple items in one column highlights and re-sorts the items in other columns. Filters based on relationships enable drilling down into the large data space. To identify interesting items in the first place, ConTour employs advanced sorting strategies, including strategies based on connectivity strength and uniqueness, as well as sorting based on item attributes. ConTour also introduces interactive nesting of columns, a powerful method to show the related items of a child column for each item in the parent column. Within the columns, ConTour shows rich attribute data about the items as well as information about the connection strengths to other datasets. Finally, ConTour provides a number of detail views, which can show items from multiple datasets and their associated data at the same time. We demonstrate the utility of our system in case studies conducted with a team of chemical biologists, who investigate the effects of chemical compounds on cells and need to understand the underlying mechanisms.

Entities:  

Mesh:

Year:  2014        PMID: 26356902      PMCID: PMC4720990          DOI: 10.1109/TVCG.2014.2346752

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  20 in total

1.  PivotPaths: Strolling through Faceted Information Spaces.

Authors:  M Dork; Nathalie Henry Riche; G Ramos; S Dumais
Journal:  IEEE Trans Vis Comput Graph       Date:  2012-12       Impact factor: 4.579

2.  Network visualization by semantic substrates.

Authors:  Ben Shneiderman; Aleks Aris
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Sep-Oct       Impact factor: 4.579

3.  Rethinking molecular similarity: comparing compounds on the basis of biological activity.

Authors:  Paula M Petrone; Benjamin Simms; Florian Nigsch; Eugen Lounkine; Peter Kutchukian; Allen Cornett; Zhan Deng; John W Davies; Jeremy L Jenkins; Meir Glick
Journal:  ACS Chem Biol       Date:  2012-05-31       Impact factor: 5.100

4.  Data completeness--the Achilles heel of drug-target networks.

Authors:  Jordi Mestres; Elisabet Gregori-Puigjané; Sergi Valverde; Ricard V Solé
Journal:  Nat Biotechnol       Date:  2008-09       Impact factor: 54.908

5.  Visual exploration across biomedical databases.

Authors:  Michael D Lieberman; Sima Taheri; Huimin Guo; Fatemeh Mirrashed; Inbal Yahav; Aleks Aris; Ben Shneiderman
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2011 Mar-Apr       Impact factor: 3.710

Review 6.  Beta2-agonist and anticholinergic drugs in the treatment of lung disease.

Authors:  Becky J Proskocil; Allison D Fryer
Journal:  Proc Am Thorac Soc       Date:  2005

Review 7.  Dual PDE3/4 and PDE4 inhibitors: novel treatments for COPD and other inflammatory airway diseases.

Authors:  Katharine H Abbott-Banner; Clive P Page
Journal:  Basic Clin Pharmacol Toxicol       Date:  2014-03-06       Impact factor: 4.080

Review 8.  Paul Ehrlich's magic bullet concept: 100 years of progress.

Authors:  Klaus Strebhardt; Axel Ullrich
Journal:  Nat Rev Cancer       Date:  2008-05-12       Impact factor: 60.716

9.  HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform.

Authors:  Hendrik Strobelt; Enrico Bertini; Joachim Braun; Oliver Deussen; Ulrich Groth; Thomas U Mayer; Dorit Merhof
Journal:  BMC Bioinformatics       Date:  2012-05-18       Impact factor: 3.169

10.  The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and Bioinformatics.

Authors:  Christoph Steinbeck; Yongquan Han; Stefan Kuhn; Oliver Horlacher; Edgar Luttmann; Egon Willighagen
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr
View more
  1 in total

1.  MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection.

Authors:  Chen He; Luana Micallef; Zia-Ur-Rehman Tanoli; Samuel Kaski; Tero Aittokallio; Giulio Jacucci
Journal:  BMC Bioinformatics       Date:  2017-09-13       Impact factor: 3.169

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.