Literature DB >> 26346632

Interfacial Activation of Candida antarctica Lipase B: Combined Evidence from Experiment and Simulation.

Themistoklis Zisis1, Peter L Freddolino2, Petri Turunen1, Muriel C F van Teeseling1, Alan E Rowan1, Kerstin G Blank1.   

Abstract

Lipase immobilization is frequently used for altering the catalytic properties of these industrially used enzymes. Many lipases bind strongly to hydrophobic surfaces where they undergo interfacial activation. Candida antarctica lipase B (CalB), one of the most commonly used biocatalysts, is frequently discussed as an atypical lipase lacking interfacial activation. Here we show that CalB displays an enhanced catalytic rate for large, bulky substrates when adsorbed to a hydrophobic interface composed of densely packed alkyl chains. We attribute this increased activity of more than 7-fold to a conformational change that yields a more open active site. This hypothesis is supported by molecular dynamics simulations that show a high mobility for a small "lid" (helix α5) close to the active site. Molecular docking calculations confirm that a highly open conformation of this helix is required for binding large, bulky substrates and that this conformation is favored in a hydrophobic environment. Taken together, our combined approach provides clear evidence for the interfacial activation of CalB on highly hydrophobic surfaces. In contrast to other lipases, however, the conformational change only affects large, bulky substrates, leading to the conclusion that CalB acts like an esterase for small substrates and as a lipase for substrates with large alcohol substituents.

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Year:  2015        PMID: 26346632      PMCID: PMC4697882          DOI: 10.1021/acs.biochem.5b00586

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  Mass transport limitations reduce the effective stereospecificity in enzyme-catalyzed kinetic resolution.

Authors:  D Rotticci; T Norin; K Hult
Journal:  Org Lett       Date:  2000-05-18       Impact factor: 6.005

2.  Site-specific immobilization of genetically engineered variants of Candida antarctica lipase B.

Authors:  Kerstin Blank; Julia Morfill; Hermann E Gaub
Journal:  Chembiochem       Date:  2006-09       Impact factor: 3.164

Review 3.  Immobilization of lipases by selective adsorption on hydrophobic supports.

Authors:  R Fernandez-Lafuente; P Armisén; P Sabuquillo; G Fernández-Lorente; J M Guisán
Journal:  Chem Phys Lipids       Date:  1998-06       Impact factor: 3.329

Review 4.  Immobilisation and application of lipases in organic media.

Authors:  Patrick Adlercreutz
Journal:  Chem Soc Rev       Date:  2013-08-07       Impact factor: 54.564

5.  Rational design of Pseudozyma antarctica lipase B yielding a general esterification catalyst.

Authors:  Danni Liu; Peter Trodler; Sabine Eiben; Katja Koschorreck; Monika Müller; Jürgen Pleiss; Steffen C Maurer; Cecilia Branneby; Rolf D Schmid; Bernhard Hauer
Journal:  Chembiochem       Date:  2010-04-12       Impact factor: 3.164

6.  An active-site titration method for lipases.

Authors:  D Rotticci; T Norin; K Hult; M Martinelle
Journal:  Biochim Biophys Acta       Date:  2000-01-03

7.  No intermediate channelling in stepwise hydrolysis of fluorescein di-beta-D-galactoside by beta-galactosidase.

Authors:  F Fieldler; H Hinz
Journal:  Eur J Biochem       Date:  1994-05-15

8.  Kinetic fluorescence measurement of fluorescein di-beta-D-galactoside hydrolysis by beta-galactosidase: intermediate channeling in stepwise catalysis by a free single enzyme.

Authors:  Z J Huang
Journal:  Biochemistry       Date:  1991-09-03       Impact factor: 3.162

9.  Catalysis at the interface: the anatomy of a conformational change in a triglyceride lipase.

Authors:  U Derewenda; A M Brzozowski; D M Lawson; Z S Derewenda
Journal:  Biochemistry       Date:  1992-02-11       Impact factor: 3.162

10.  Genome Sequence of the Basidiomycetous Yeast Pseudozyma antarctica T-34, a Producer of the Glycolipid Biosurfactants Mannosylerythritol Lipids.

Authors:  Tomotake Morita; Hideaki Koike; Yoshinori Koyama; Hiroko Hagiwara; Emi Ito; Tokuma Fukuoka; Tomohiro Imura; Masayuki Machida; Dai Kitamoto
Journal:  Genome Announc       Date:  2013-04-04
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  13 in total

1.  To Keep or Not to Keep? The Question of Crystallographic Waters for Enzyme Simulations in Organic Solvent.

Authors:  Jayangika N Dahanayake; Devaki N Gautam; Rajni Verma; Katie R Mitchell-Koch
Journal:  Mol Simul       Date:  2016-03-22       Impact factor: 2.178

2.  Entropy connects water structure and dynamics in protein hydration layer.

Authors:  Jayangika N Dahanayake; Katie R Mitchell-Koch
Journal:  Phys Chem Chem Phys       Date:  2018-05-30       Impact factor: 3.676

3.  Display of fungal hydrophobin on the Pichia pastoris cell surface and its influence on Candida antarctica lipase B.

Authors:  Pan Wang; Jie He; Yufei Sun; Matthew Reynolds; Li Zhang; Shuangyan Han; Shuli Liang; Haixin Sui; Ying Lin
Journal:  Appl Microbiol Biotechnol       Date:  2016-03-12       Impact factor: 4.813

4.  Activation and Stabilization of Lipase B from Candida antarctica by Immobilization on Polymer Brushes with Optimized Surface Structure.

Authors:  Dennis Sebastian Wunschik; André Lorenz; Kim Nadine Ingenbosch; Jochen Stefan Gutmann; Kerstin Hoffmann-Jacobsen
Journal:  Appl Biochem Biotechnol       Date:  2022-03-31       Impact factor: 3.094

Review 5.  The Lid Domain in Lipases: Structural and Functional Determinant of Enzymatic Properties.

Authors:  Faez Iqbal Khan; Dongming Lan; Rabia Durrani; Weiqian Huan; Zexin Zhao; Yonghua Wang
Journal:  Front Bioeng Biotechnol       Date:  2017-03-09

6.  Enzymatic Synthesis of Glycerol Carbonate Using a Lipase Immobilized on Magnetic Organosilica Nanoflowers as a Catalyst.

Authors:  Yingjie Du; Jing Gao; Weixi Kong; Liya Zhou; Li Ma; Ying He; Zhihong Huang; Yanjun Jiang
Journal:  ACS Omega       Date:  2018-06-20

7.  How Does Solvation Layer Mobility Affect Protein Structural Dynamics?

Authors:  Jayangika N Dahanayake; Katie R Mitchell-Koch
Journal:  Front Mol Biosci       Date:  2018-07-13

8.  In Silico Studies of Small Molecule Interactions with Enzymes Reveal Aspects of Catalytic Function.

Authors:  Rajni Verma; Katie Mitchell-Koch
Journal:  Catalysts       Date:  2017-07-14       Impact factor: 4.146

9.  Enhancing the Bioconversion of Azelaic Acid to Its Derivatives by Response Surface Methodology.

Authors:  Nurshafira Khairudin; Mahiran Basri; Hamid Reza Fard Masoumi; Shazwani Samson; Siti Efliza Ashari
Journal:  Molecules       Date:  2018-02-13       Impact factor: 4.411

10.  Artificial cysteine-lipases with high activity and altered catalytic mechanism created by laboratory evolution.

Authors:  Yixin Cen; Warispreet Singh; Mamatjan Arkin; Thomas S Moody; Meilan Huang; Jiahai Zhou; Qi Wu; Manfred T Reetz
Journal:  Nat Commun       Date:  2019-07-19       Impact factor: 14.919

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