Literature DB >> 1737010

Catalysis at the interface: the anatomy of a conformational change in a triglyceride lipase.

U Derewenda1, A M Brzozowski, D M Lawson, Z S Derewenda.   

Abstract

The crystal structure of an extracellular triglyceride lipase (from a fungus Rhizomucor miehei) inhibited irreversibly by diethyl p-nitrophenyl phosphate (E600) was solved by X-ray crystallographic methods and refined to a resolution of 2.65 A. The crystals are isomorphous with those of n-hexylphosphonate ethyl ester/lipase complex [Brzozowski, A. M., Derewenda, U., Derewenda, Z. S., Dodson, G. G., Lawson, D. M., Turkenburg, J. P., Bjorkling, F., Huge-Jensen, B., Patkar, S. A., & Thim, L. (1991) Nature 351, 491-494], where the conformational change was originally observed. The higher resolution of the present study allowed for a detailed analysis of the stereochemistry of the change observed in the inhibited enzyme. The movement of a 15 amino acid long "lid" (residues 82-96) is a hinge-type rigid-body motion which transports some of the atoms of a short alpha-helix (residues 85-91) by over 12 A. There are two hinge regions (residues 83-84 and 91-95) within which pronounced transitions of secondary structure between alpha and beta conformations are caused by dramatic changes of specific conformational dihedral angles (phi and psi). As a result of this change a hydrophobic area of ca. 800 A2 (8% of the total molecule surface) becomes exposed. Other triglyceride lipases are also known to have "lids" similar to the one observed in the R. miehei enzyme, and it is possible that the general stereochemistry of lipase activation at the oil-water interfaces inferred from the present X-ray study is likely to apply to the entire family of lipases.

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Year:  1992        PMID: 1737010     DOI: 10.1021/bi00120a034

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  59 in total

1.  Influence of a lipid interface on protein dynamics in a fungal lipase.

Authors:  G H Peters; R P Bywater
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Conformational changes and orientation of Humicola lanuginosa lipase on a solid hydrophobic surface: an in situ interface Fourier transform infrared-attenuated total reflection study.

Authors:  Sylvie Noinville; Madeleine Revault; Marie-Hélène Baron; Ali Tiss; Stéphane Yapoudjian; Margarita Ivanova; Robert Verger
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  Orientation and conformation of a lipase at an interface studied by molecular dynamics simulations.

Authors:  Morten Ø Jensen; Torben R Jensen; Kristian Kjaer; Thomas Bjørnholm; Ole G Mouritsen; Günther H Peters
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

4.  The Lipase Engineering Database: a navigation and analysis tool for protein families.

Authors:  Markus Fischer; Jürgen Pleiss
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Unlocking the mystery behind the activation phenomenon of T1 lipase: a molecular dynamics simulations approach.

Authors:  Mohd Zulhilmi Abdul Rahman; Abu Bakar Salleh; Raja Noor Zaliha Raja Abdul Rahman; Mohd Basyaruddin Abdul Rahman; Mahiran Basri; Thean Chor Leow
Journal:  Protein Sci       Date:  2012-07-06       Impact factor: 6.725

6.  Solvent-induced lid opening in lipases: a molecular dynamics study.

Authors:  Sascha Rehm; Peter Trodler; Jürgen Pleiss
Journal:  Protein Sci       Date:  2010-11       Impact factor: 6.725

7.  Crystal structure of cutinase covalently inhibited by a triglyceride analogue.

Authors:  S Longhi; M Mannesse; H M Verheij; G H De Haas; M Egmond; E Knoops-Mouthuy; C Cambillau
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

Review 8.  Effects of surfactants on lipase structure, activity, and inhibition.

Authors:  Vincent Delorme; Rabeb Dhouib; Stéphane Canaan; Frédéric Fotiadu; Frédéric Carrière; Jean-François Cavalier
Journal:  Pharm Res       Date:  2011-01-14       Impact factor: 4.200

9.  Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases.

Authors:  A C Wallace; R A Laskowski; J M Thornton
Journal:  Protein Sci       Date:  1996-06       Impact factor: 6.725

10.  Electrostatic steering and ionic tethering in enzyme-ligand binding: insights from simulations.

Authors:  R C Wade; R R Gabdoulline; S K Lüdemann; V Lounnas
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

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