Literature DB >> 26334867

Efficient genetic engineering of human intestinal organoids using electroporation.

Masayuki Fujii1,2, Mami Matano1, Kosaku Nanki1, Toshiro Sato1.   

Abstract

Gene modification in untransformed human intestinal cells is an attractive approach for studying gene function in intestinal diseases. However, because of the lack of practical tools, such studies have largely depended upon surrogates, such as gene-engineered mice or immortalized human cell lines. By taking advantage of the recently developed intestinal organoid culture method, we developed a methodology for modulating genes of interest in untransformed human colonic organoids via electroporation of gene vectors. Here we describe a detailed protocol for the generation of intestinal organoids by culture with essential growth factors in a basement membrane matrix. We also describe how to stably integrate genes via the piggyBac transposon, as well as precise genome editing using the CRISPR-Cas9 system. Beginning with crypt isolation from a human colon sample, genetically modified organoids can be obtained in 3 weeks.

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Year:  2015        PMID: 26334867     DOI: 10.1038/nprot.2015.088

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  11 in total

1.  Controlled gene expression in primary Lgr5 organoid cultures.

Authors:  Bon-Kyoung Koo; Daniel E Stange; Toshiro Sato; Wouter Karthaus; Henner F Farin; Meritxell Huch; Johan H van Es; Hans Clevers
Journal:  Nat Methods       Date:  2011-12-04       Impact factor: 28.547

2.  Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.

Authors:  Toshiro Sato; Robert G Vries; Hugo J Snippert; Marc van de Wetering; Nick Barker; Daniel E Stange; Johan H van Es; Arie Abo; Pekka Kujala; Peter J Peters; Hans Clevers
Journal:  Nature       Date:  2009-03-29       Impact factor: 49.962

3.  Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett's epithelium.

Authors:  Toshiro Sato; Daniel E Stange; Marc Ferrante; Robert G J Vries; Johan H Van Es; Stieneke Van den Brink; Winan J Van Houdt; Apollo Pronk; Joost Van Gorp; Peter D Siersema; Hans Clevers
Journal:  Gastroenterology       Date:  2011-09-02       Impact factor: 22.682

4.  Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice.

Authors:  Sheng Ding; Xiaohui Wu; Gang Li; Min Han; Yuan Zhuang; Tian Xu
Journal:  Cell       Date:  2005-08-12       Impact factor: 41.582

5.  Sequential cancer mutations in cultured human intestinal stem cells.

Authors:  Jarno Drost; Richard H van Jaarsveld; Bas Ponsioen; Cheryl Zimberlin; Ruben van Boxtel; Arjan Buijs; Norman Sachs; René M Overmeer; G Johan Offerhaus; Harry Begthel; Jeroen Korving; Marc van de Wetering; Gerald Schwank; Meike Logtenberg; Edwin Cuppen; Hugo J Snippert; Jan Paul Medema; Geert J P L Kops; Hans Clevers
Journal:  Nature       Date:  2015-04-29       Impact factor: 49.962

6.  Genome engineering using the CRISPR-Cas9 system.

Authors:  F Ann Ran; Patrick D Hsu; Jason Wright; Vineeta Agarwala; David A Scott; Feng Zhang
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

7.  Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients.

Authors:  Gerald Schwank; Bon-Kyoung Koo; Valentina Sasselli; Johanna F Dekkers; Inha Heo; Turan Demircan; Nobuo Sasaki; Sander Boymans; Edwin Cuppen; Cornelis K van der Ent; Edward E S Nieuwenhuis; Jeffrey M Beekman; Hans Clevers
Journal:  Cell Stem Cell       Date:  2013-12-05       Impact factor: 24.633

8.  Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids.

Authors:  Mami Matano; Shoichi Date; Mariko Shimokawa; Ai Takano; Masayuki Fujii; Yuki Ohta; Toshiaki Watanabe; Takanori Kanai; Toshiro Sato
Journal:  Nat Med       Date:  2015-02-23       Impact factor: 53.440

9.  Electroporation efficiency in mammalian cells is increased by dimethyl sulfoxide (DMSO).

Authors:  H Melkonyan; C Sorg; M Klempt
Journal:  Nucleic Acids Res       Date:  1996-11-01       Impact factor: 16.971

10.  Isolation and characterization of intestinal stem cells based on surface marker combinations and colony-formation assay.

Authors:  Fengchao Wang; David Scoville; Xi C He; Maxime M Mahe; Andrew Box; John M Perry; Nicholas R Smith; Nan Ye Lei; Paige S Davies; Megan K Fuller; Jeffrey S Haug; Melainia McClain; Adam D Gracz; Sheng Ding; Matthias Stelzner; James C Y Dunn; Scott T Magness; Melissa H Wong; Martin G Martin; Michael Helmrath; Linheng Li
Journal:  Gastroenterology       Date:  2013-05-02       Impact factor: 33.883

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  101 in total

1.  Gene manipulation in liver ductal organoids by optimized recombinant adeno-associated virus vectors.

Authors:  Jinsong Wei; Gai Ran; Xin Wang; Ning Jiang; Jianqing Liang; Xinhua Lin; Chen Ling; Bing Zhao
Journal:  J Biol Chem       Date:  2019-07-31       Impact factor: 5.157

2.  A surgical orthotopic organoid transplantation approach in mice to visualize and study colorectal cancer progression.

Authors:  Arianna Fumagalli; Saskia J E Suijkerbuijk; Harry Begthel; Evelyne Beerling; Koen C Oost; Hugo J Snippert; Jacco van Rheenen; Jarno Drost
Journal:  Nat Protoc       Date:  2018-01-04       Impact factor: 13.491

3.  Colonoscopy-based colorectal cancer modeling in mice with CRISPR-Cas9 genome editing and organoid transplantation.

Authors:  Jatin Roper; Tuomas Tammela; Adam Akkad; Mohammad Almeqdadi; Sebastian B Santos; Tyler Jacks; Ömer H Yilmaz
Journal:  Nat Protoc       Date:  2018-01-04       Impact factor: 13.491

4.  Development of Intestinal Scaffolds that Mimic Native Mammalian Intestinal Tissue.

Authors:  Mitchell R Ladd; Cait M Costello; Carolyn Gosztyla; Adam D Werts; Blake Johnson; William B Fulton; Laura Y Martin; Elizabeth J Redfield; Bryan Crawford; Rohan Panaparambil; Chhinder P Sodhi; John C March; David J Hackam
Journal:  Tissue Eng Part A       Date:  2019-09-03       Impact factor: 3.845

Review 5.  The third dimension: new developments in cell culture models for colorectal research.

Authors:  Joana F S Pereira; Nikhil T Awatade; Cláudia A Loureiro; Paulo Matos; Margarida D Amaral; Peter Jordan
Journal:  Cell Mol Life Sci       Date:  2016-05-04       Impact factor: 9.261

Review 6.  Biomaterials-Based Approaches to Tumor Spheroid and Organoid Modeling.

Authors:  Pradip Shahi Thakuri; Chun Liu; Gary D Luker; Hossein Tavana
Journal:  Adv Healthc Mater       Date:  2017-12-04       Impact factor: 9.933

7.  In Vitro Generation of Mouse Colon Crypts.

Authors:  Yuli Wang; Dulan B Gunasekara; Peter J Attayek; Mark I Reed; Matthew DiSalvo; Daniel L Nguyen; Johanna S Dutton; Michael S Lebhar; Scott J Bultman; Christopher E Sims; Scott T Magness; Nancy L Allbritton
Journal:  ACS Biomater Sci Eng       Date:  2017-08-29

8.  Targeting p53-dependent stem cell loss for intestinal chemoprotection.

Authors:  Brian J Leibowitz; Liheng Yang; Liang Wei; Monica E Buchanan; Madani Rachid; Robert A Parise; Jan H Beumer; Julie L Eiseman; Robert E Schoen; Lin Zhang; Jian Yu
Journal:  Sci Transl Med       Date:  2018-02-07       Impact factor: 17.956

9.  Salmonella enterica Infection of Murine and Human Enteroid-Derived Monolayers Elicits Differential Activation of Epithelium-Intrinsic Inflammasomes.

Authors:  Mayumi K Holly; Xiao Han; Leigh A Knodler; Bruce A Vallance; Jason G Smith; Edward J Zhao; Shauna M Crowley; Joannie M Allaire
Journal:  Infect Immun       Date:  2020-06-22       Impact factor: 3.441

10.  Loss of aryl hydrocarbon receptor potentiates FoxM1 signaling to enhance self-renewal of colonic stem and progenitor cells.

Authors:  Huajun Han; Laurie A Davidson; Yang-Yi Fan; Jennifer S Goldsby; Grace Yoon; Un-Ho Jin; Gus A Wright; Kerstin K Landrock; Bradley R Weeks; Rachel C Wright; Clinton D Allred; Arul Jayaraman; Ivan Ivanov; Jatin Roper; Stephen H Safe; Robert S Chapkin
Journal:  EMBO J       Date:  2020-08-10       Impact factor: 11.598

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