Literature DB >> 26331261

Slow Internal Dynamics and Charge Expansion in the Disordered Protein CGRP: A Comparison with Amylin.

Sara M Sizemore1, Stephanie M Cope1, Anindya Roy2, Giovanna Ghirlanda3, Sara M Vaiana4.   

Abstract

We provide the first direct experimental comparison, to our knowledge, between the internal dynamics of calcitonin-gene-related peptide (CGRP) and amylin (islet amyloid polypeptide, IAPP), two intrinsically disordered proteins of the calcitonin peptide family. Our end-to-end contact formation measurements reveal that in aqueous solution (i.e., in the absence of structure-inducing organic solvents) CGRP preferentially populates conformations with short end-to-end distances. However, the end-to-end distance of CGRP is larger than that of IAPP. We find that electrostatic interactions can account for such a difference. At variance with previous reports on the secondary structure of CGRP, we find that the end-to-end distance of the peptide increases with decreasing pH and salt concentration, due to Coulomb repulsion by charged residues. Interestingly, our data show that the reconfiguration dynamics of CGRP is significantly slower than that of human IAPP in water but not in denaturant, providing experimental evidence for roughness in the energy landscape, or internal friction, in these peptides. The data reported here provide both structural and dynamical information that can be used to validate results from molecular simulations of calcitonin family peptides in aqueous solution.
Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26331261      PMCID: PMC4564681          DOI: 10.1016/j.bpj.2015.07.023

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  75 in total

1.  Conformational transitions of islet amyloid polypeptide (IAPP) in amyloid formation in vitro.

Authors:  R Kayed; J Bernhagen; N Greenfield; K Sweimeh; H Brunner; W Voelter; A Kapurniotu
Journal:  J Mol Biol       Date:  1999-04-09       Impact factor: 5.469

2.  From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

Authors:  Sonja Müller-Späth; Andrea Soranno; Verena Hirschfeld; Hagen Hofmann; Stefan Rüegger; Luc Reymond; Daniel Nettels; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-16       Impact factor: 11.205

3.  Extremely slow intramolecular diffusion in unfolded protein L.

Authors:  Steven A Waldauer; Olgica Bakajin; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

Review 4.  Solvent viscosity and friction in protein folding dynamics.

Authors:  Stephen J Hagen
Journal:  Curr Protein Pept Sci       Date:  2010-08       Impact factor: 3.272

5.  Aggregation of α-synuclein is kinetically controlled by intramolecular diffusion.

Authors:  Basir Ahmad; Yujie Chen; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-27       Impact factor: 11.205

Review 6.  The interplay between structure and function in intrinsically unstructured proteins.

Authors:  Peter Tompa
Journal:  FEBS Lett       Date:  2005-04-08       Impact factor: 4.124

7.  Intrinsic disorder: signaling via highly specific but short-lived association.

Authors:  Huan-Xiang Zhou
Journal:  Trends Biochem Sci       Date:  2011-12-07       Impact factor: 13.807

Review 8.  Neuroanatomical localization, pharmacological characterization and functions of CGRP, related peptides and their receptors.

Authors:  D van Rossum; U K Hanisch; R Quirion
Journal:  Neurosci Biobehav Rev       Date:  1997-09       Impact factor: 8.989

9.  Multi-scaled explorations of binding-induced folding of intrinsically disordered protein inhibitor IA3 to its target enzyme.

Authors:  Jin Wang; Yong Wang; Xiakun Chu; Stephen J Hagen; Wei Han; Erkang Wang
Journal:  PLoS Comput Biol       Date:  2011-04-07       Impact factor: 4.475

Review 10.  Migraine: new molecular mechanisms.

Authors:  Daniela Pietrobon
Journal:  Neuroscientist       Date:  2005-08       Impact factor: 7.519

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  9 in total

1.  What's in a Sequence? Distinct Structures and Dynamics of Two Disordered Calcitonin Family Peptides.

Authors:  Martin Muschol
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

2.  Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations.

Authors:  Andrea Soranno; Andrea Holla; Fabian Dingfelder; Daniel Nettels; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

Review 3.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Authors:  Huan-Xiang Zhou; Xiaodong Pang
Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

4.  A unified analytical theory of heteropolymers for sequence-specific phase behaviors of polyelectrolytes and polyampholytes.

Authors:  Yi-Hsuan Lin; Jacob P Brady; Hue Sun Chan; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-01-31       Impact factor: 3.488

5.  Intrachain interaction topology can identify functionally similar intrinsically disordered proteins.

Authors:  Jonathan Huihui; Kingshuk Ghosh
Journal:  Biophys J       Date:  2021-04-15       Impact factor: 4.033

Review 6.  Rules of Physical Mathematics Govern Intrinsically Disordered Proteins.

Authors:  Kingshuk Ghosh; Jonathan Huihui; Michael Phillips; Austin Haider
Journal:  Annu Rev Biophys       Date:  2022-02-04       Impact factor: 19.763

7.  Carbonyl-based blue autofluorescence of proteins and amino acids.

Authors:  Chamani Niyangoda; Tatiana Miti; Leonid Breydo; Vladimir Uversky; Martin Muschol
Journal:  PLoS One       Date:  2017-05-25       Impact factor: 3.240

Review 8.  Relevance of Electrostatic Charges in Compactness, Aggregation, and Phase Separation of Intrinsically Disordered Proteins.

Authors:  Greta Bianchi; Sonia Longhi; Rita Grandori; Stefania Brocca
Journal:  Int J Mol Sci       Date:  2020-08-27       Impact factor: 5.923

9.  Unraveling the Role of Charge Patterning in the Micellar Structure of Sequence-Defined Amphiphilic Peptoid Oligomers by Molecular Dynamics Simulations.

Authors:  Erin Tsai; Hishara Keshani Gallage Dona; Xinjie Tong; Pu Du; Brian Novak; Rolf David; Steven W Rick; Donghui Zhang; Revati Kumar
Journal:  Macromolecules       Date:  2022-06-14       Impact factor: 6.057

  9 in total

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