Literature DB >> 26330518

Mutation--The Engine of Evolution: Studying Mutation and Its Role in the Evolution of Bacteria.

Ruth Hershberg1.   

Abstract

Mutation is the engine of evolution in that it generates the genetic variation on which the evolutionary process depends. To understand the evolutionary process we must therefore characterize the rates and patterns of mutation. Starting with the seminal Luria and Delbruck fluctuation experiments in 1943, studies utilizing a variety of approaches have revealed much about mutation rates and patterns and about how these may vary between different bacterial strains and species along the chromosome and between different growth conditions. This work provides a critical overview of the results and conclusions drawn from these studies, of the debate surrounding some of these conclusions, and of the challenges faced when studying mutation and its role in bacterial evolution.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2015        PMID: 26330518      PMCID: PMC4563715          DOI: 10.1101/cshperspect.a018077

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  76 in total

Review 1.  Spontaneous mutagenesis: experimental, genetic and other factors.

Authors:  K C Smith
Journal:  Mutat Res       Date:  1992-08       Impact factor: 2.433

2.  Correlations between genomic GC levels and optimal growth temperatures in prokaryotes.

Authors:  Héctor Musto; Hugo Naya; Alejandro Zavala; Héctor Romero; Fernando Alvarez-Valín; Giorgio Bernardi
Journal:  FEBS Lett       Date:  2004-08-27       Impact factor: 4.124

3.  Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes.

Authors:  N Galtier; J R Lobry
Journal:  J Mol Evol       Date:  1997-06       Impact factor: 2.395

Review 4.  Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition.

Authors:  Ben Ryall; Gustavo Eydallin; Thomas Ferenci
Journal:  Microbiol Mol Biol Rev       Date:  2012-09       Impact factor: 11.056

5.  A selective force favoring increased G+C content in bacterial genes.

Authors:  Rahul Raghavan; Yogeshwar D Kelkar; Howard Ochman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

Review 6.  Evaluating evolutionary models of stress-induced mutagenesis in bacteria.

Authors:  R Craig MacLean; Clara Torres-Barceló; Richard Moxon
Journal:  Nat Rev Genet       Date:  2013-02-12       Impact factor: 53.242

7.  Evolution of the mutation rate.

Authors:  Michael Lynch
Journal:  Trends Genet       Date:  2010-06-30       Impact factor: 11.639

8.  High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.

Authors:  Kathryn E Holt; Julian Parkhill; Camila J Mazzoni; Philippe Roumagnac; François-Xavier Weill; Ian Goodhead; Richard Rance; Stephen Baker; Duncan J Maskell; John Wain; Christiane Dolecek; Mark Achtman; Gordon Dougan
Journal:  Nat Genet       Date:  2008-07-27       Impact factor: 38.330

Review 9.  Biased gene conversion and the evolution of mammalian genomic landscapes.

Authors:  Laurent Duret; Nicolas Galtier
Journal:  Annu Rev Genomics Hum Genet       Date:  2009       Impact factor: 8.929

10.  Reduced selection leads to accelerated gene loss in Shigella.

Authors:  Ruth Hershberg; Hua Tang; Dmitri A Petrov
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  17 in total

1.  Formation and Repair of an Interstrand DNA Cross-Link Arising from a Common Endogenous Lesion.

Authors:  Kurt Housh; Jay S Jha; Zhiyu Yang; Tuhin Haldar; Kevin M Johnson; Jiekai Yin; Yinsheng Wang; Kent S Gates
Journal:  J Am Chem Soc       Date:  2021-09-13       Impact factor: 15.419

2.  Continent-wide evolutionary trends of emerging SARS-CoV-2 variants: dynamic profiles from Alpha to Omicron.

Authors:  Chiranjib Chakraborty; Manojit Bhattacharya; Ashish Ranjan Sharma; Kuldeep Dhama; Sang-Soo Lee
Journal:  Geroscience       Date:  2022-07-13       Impact factor: 7.581

3.  Genome-wide insights into population structure and host specificity of Campylobacter jejuni.

Authors:  Lennard Epping; Birgit Walther; Rosario M Piro; Marie-Theres Knüver; Charlotte Huber; Andrea Thürmer; Antje Flieger; Angelika Fruth; Nicol Janecko; Lothar H Wieler; Kerstin Stingl; Torsten Semmler
Journal:  Sci Rep       Date:  2021-05-14       Impact factor: 4.379

4.  Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection.

Authors:  Sheli L Ostrow; Einav Simon; Elad Prinz; Tova Bick; Talia Shentzer; Sima S Nagawkar; Edmond Sabo; Ofer Ben-Izhak; Ruth Hershberg; Dov Hershkovitz
Journal:  Sci Rep       Date:  2016-02-23       Impact factor: 4.379

5.  Just how Lamarckian is CRISPR-Cas immunity: the continuum of evolvability mechanisms.

Authors:  Eugene V Koonin; Yuri I Wolf
Journal:  Biol Direct       Date:  2016-02-24       Impact factor: 4.540

6.  A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input-mutation output relationships.

Authors:  Ram P Maharjan; Thomas Ferenci
Journal:  PLoS Biol       Date:  2017-06-08       Impact factor: 8.029

Review 7.  Formation and repair of unavoidable, endogenous interstrand cross-links in cellular DNA.

Authors:  Kurt Housh; Jay S Jha; Tuhin Haldar; Saosan Binth Md Amin; Tanhaul Islam; Amanda Wallace; Anuoluwapo Gomina; Xu Guo; Christopher Nel; Jesse W Wyatt; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2020-12-24

8.  Genomic GC content drifts downward in most bacterial genomes.

Authors:  Bert Ely
Journal:  PLoS One       Date:  2021-05-26       Impact factor: 3.240

9.  ImuA Facilitates SOS Mutagenesis by Inhibiting RecA-Mediated Activity in Myxococcus xanthus.

Authors:  Duohong Sheng; Ye Wang; Zhiwei Jiang; Dongkai Liu; Yuezhong Li
Journal:  Appl Environ Microbiol       Date:  2021-08-26       Impact factor: 4.792

10.  Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.

Authors:  Henrique Machado; Yara Seif; George Sakoulas; Connor A Olson; Ying Hefner; Amitesh Anand; Ying Z Jones; Richard Szubin; Bernhard O Palsson; Victor Nizet; Adam M Feist
Journal:  Commun Biol       Date:  2021-06-25
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