Literature DB >> 19630562

Biased gene conversion and the evolution of mammalian genomic landscapes.

Laurent Duret1, Nicolas Galtier.   

Abstract

Recombination is typically thought of as a symmetrical process resulting in large-scale reciprocal genetic exchanges between homologous chromosomes. Recombination events, however, are also accompanied by short-scale, unidirectional exchanges known as gene conversion in the neighborhood of the initiating double-strand break. A large body of evidence suggests that gene conversion is GC-biased in many eukaryotes, including mammals and human. AT/GC heterozygotes produce more GC- than AT-gametes, thus conferring a population advantage to GC-alleles in high-recombining regions. This apparently unimportant feature of our molecular machinery has major evolutionary consequences. Structurally, GC-biased gene conversion explains the spatial distribution of GC-content in mammalian genomes-the so-called isochore structure. Functionally, GC-biased gene conversion promotes the segregation and fixation of deleterious AT --> GC mutations, thus increasing our genomic mutation load. Here we review the recent evidence for a GC-biased gene conversion process in mammals, and its consequences for genomic landscapes, molecular evolution, and human functional genomics.

Entities:  

Mesh:

Year:  2009        PMID: 19630562     DOI: 10.1146/annurev-genom-082908-150001

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  312 in total

1.  DNA recombination. Recombination initiation maps of individual human genomes.

Authors:  Florencia Pratto; Kevin Brick; Pavel Khil; Fatima Smagulova; Galina V Petukhova; R Daniel Camerini-Otero
Journal:  Science       Date:  2014-11-14       Impact factor: 47.728

2.  The evolution of gene expression levels in mammalian organs.

Authors:  David Brawand; Magali Soumillon; Anamaria Necsulea; Philippe Julien; Gábor Csárdi; Patrick Harrigan; Manuela Weier; Angélica Liechti; Ayinuer Aximu-Petri; Martin Kircher; Frank W Albert; Ulrich Zeller; Philipp Khaitovich; Frank Grützner; Sven Bergmann; Rasmus Nielsen; Svante Pääbo; Henrik Kaessmann
Journal:  Nature       Date:  2011-10-19       Impact factor: 49.962

3.  Pack-MULEs: Recycling and reshaping genes through GC-biased acquisition.

Authors:  Ann A Ferguson; Ning Jiang
Journal:  Mob Genet Elements       Date:  2011-07-01

4.  The existence of species rests on a metastable equilibrium between inbreeding and outbreeding. An essay on the close relationship between speciation, inbreeding and recessive mutations.

Authors:  Etienne Joly
Journal:  Biol Direct       Date:  2011-12-09       Impact factor: 4.540

5.  Reducing system noise in copy number data using principal components of self-self hybridizations.

Authors:  Yoon-ha Lee; Michael Ronemus; Jude Kendall; B Lakshmi; Anthony Leotta; Dan Levy; Diane Esposito; Vladimir Grubor; Kenny Ye; Michael Wigler; Boris Yamrom
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

6.  A fungal gene reinforces Mendel's laws by counteracting genetic cheating.

Authors:  Sven J Saupe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

7.  Detecting positive selection within genomes: the problem of biased gene conversion.

Authors:  Abhirami Ratnakumar; Sylvain Mousset; Sylvain Glémin; Jonas Berglund; Nicolas Galtier; Laurent Duret; Matthew T Webster
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

8.  Surprising fitness consequences of GC-biased gene conversion: I. Mutation load and inbreeding depression.

Authors:  Sylvain Glémin
Journal:  Genetics       Date:  2010-04-26       Impact factor: 4.562

9.  Recombination-associated sequence homogenization of neighboring Alu elements: signature of nonallelic gene conversion.

Authors:  Alexey Aleshin; Degui Zhi
Journal:  Mol Biol Evol       Date:  2010-05-07       Impact factor: 16.240

10.  Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes.

Authors:  Jonathan Romiguier; Vincent Ranwez; Emmanuel J P Douzery; Nicolas Galtier
Journal:  Genome Res       Date:  2010-06-07       Impact factor: 9.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.