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Literature DB >> 26282327

Third Report on Chicken Genes and Chromosomes 2015.

Michael Schmid¹, Jacqueline Smith, David W Burt, Bronwen L Aken, Parker B Antin, Alan L Archibald, Chris Ashwell, Perry J Blackshear, Clarissa Boschiero, C Titus Brown, Shane C Burgess, Hans H Cheng, William Chow, Derrick J Coble, Amanda Cooksey, Richard P M A Crooijmans, Joana Damas, Richard V N Davis, Dirk-Jan de Koning, Mary E Delany, Thomas Derrien, Takele T Desta, Ian C Dunn, Matthew Dunn, Hans Ellegren, Lél Eöry, Ionas Erb, Marta Farré, Mario Fasold, Damarius Fleming, Paul Flicek, Katie E Fowler, Laure Frésard, David P Froman, Valerie Garceau, Paul P Gardner, Almas A Gheyas, Darren K Griffin, Martien A M Groenen, Thomas Haaf, Olivier Hanotte, Alan Hart, Julien Häsler, S Blair Hedges, Jana Hertel, Kerstin Howe, Allen Hubbard, David A Hume, Pete Kaiser, Darek Kedra, Stephen J Kemp, Christophe Klopp, Kalmia E Kniel, Richard Kuo, Sandrine Lagarrigue, Susan J Lamont, Denis M Larkin, Raman A Lawal, Sarah M Markland, Fiona McCarthy, Heather A McCormack, Marla C McPherson, Akira Motegi, Stefan A Muljo, Andrea Münsterberg, Rishi Nag, Indrajit Nanda, Michael Neuberger, Anne Nitsche, Cedric Notredame, Harry Noyes, Rebecca O'Connor, Elizabeth A O'Hare, Andrew J Oler, Sheila C Ommeh, Helio Pais, Michael Persia, Frédérique Pitel, Likit Preeyanon, Pablo Prieto Barja, Elizabeth M Pritchett, Douglas D Rhoads, Charmaine M Robinson, Michael N Romanov, Max Rothschild, Pierre-François Roux, Carl J Schmidt, Alisa-Sophia Schneider, Matthew G Schwartz, Steve M Searle, Michael A Skinner, Craig A Smith, Peter F Stadler, Tammy E Steeves, Claus Steinlein, Liang Sun, Minoru Takata, Igor Ulitsky, Qing Wang, Ying Wang, Wesley C Warren, Jonathan M D Wood, David Wragg, Huaijun Zhou.

Abstract

Entities: Chemical

Mesh：

Year: 2015 PMID： 26282327 PMCID： PMC5120589 DOI： 10.1159/000430927

Source DB: PubMed Journal: Cytogenet Genome Res ISSN： 1424-8581 Impact factor: 1.636

× No keyword cloud information.

22 in total

Review 1. Sequencing technologies - the next generation.

Authors: Michael L Metzker
Journal: Nat Rev Genet Date: 2009-12-08 Impact factor: 53.242

2. Next-generation sequencing reveals genomic features in the Japanese quail.

Authors: Ryouka Kawahara-Miki; Satoshi Sano; Mitsuo Nunome; Tsuyoshi Shimmura; Takehito Kuwayama; Shinji Takahashi; Takaharu Kawashima; Yoichi Matsuda; Takashi Yoshimura; Tomohiro Kono
Journal: Genomics Date: 2013-04-02 Impact factor: 5.736

3. The genome of a songbird.

Authors: Wesley C Warren; David F Clayton; Hans Ellegren; Arthur P Arnold; Ladeana W Hillier; Axel Künstner; Steve Searle; Simon White; Albert J Vilella; Susan Fairley; Andreas Heger; Lesheng Kong; Chris P Ponting; Erich D Jarvis; Claudio V Mello; Pat Minx; Peter Lovell; Tarciso A F Velho; Margaret Ferris; Christopher N Balakrishnan; Saurabh Sinha; Charles Blatti; Sarah E London; Yun Li; Ya-Chi Lin; Julia George; Jonathan Sweedler; Bruce Southey; Preethi Gunaratne; Michael Watson; Kiwoong Nam; Niclas Backström; Linnea Smeds; Benoit Nabholz; Yuichiro Itoh; Osceola Whitney; Andreas R Pfenning; Jason Howard; Martin Völker; Bejamin M Skinner; Darren K Griffin; Liang Ye; William M McLaren; Paul Flicek; Victor Quesada; Gloria Velasco; Carlos Lopez-Otin; Xose S Puente; Tsviya Olender; Doron Lancet; Arian F A Smit; Robert Hubley; Miriam K Konkel; Jerilyn A Walker; Mark A Batzer; Wanjun Gu; David D Pollock; Lin Chen; Ze Cheng; Evan E Eichler; Jessica Stapley; Jon Slate; Robert Ekblom; Tim Birkhead; Terry Burke; David Burt; Constance Scharff; Iris Adam; Hugues Richard; Marc Sultan; Alexey Soldatov; Hans Lehrach; Scott V Edwards; Shiaw-Pyng Yang; Xiaoching Li; Tina Graves; Lucinda Fulton; Joanne Nelson; Asif Chinwalla; Shunfeng Hou; Elaine R Mardis; Richard K Wilson
Journal: Nature Date: 2010-04-01 Impact factor: 49.962

4. Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude.

Authors: Qingle Cai; Xiaoju Qian; Yongshan Lang; Yadan Luo; Jiaohui Xu; Shengkai Pan; Yuanyuan Hui; Caiyun Gou; Yue Cai; Meirong Hao; Jinyang Zhao; Songbo Wang; Zhaobao Wang; Xinming Zhang; Rongjun He; Jinchao Liu; Longhai Luo; Yingrui Li; Jun Wang
Journal: Genome Biol Date: 2013-03-28 Impact factor: 13.583

5. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.

Authors: Rami A Dalloul; Julie A Long; Aleksey V Zimin; Luqman Aslam; Kathryn Beal; Le Ann Blomberg; Pascal Bouffard; David W Burt; Oswald Crasta; Richard P M A Crooijmans; Kristal Cooper; Roger A Coulombe; Supriyo De; Mary E Delany; Jerry B Dodgson; Jennifer J Dong; Clive Evans; Karin M Frederickson; Paul Flicek; Liliana Florea; Otto Folkerts; Martien A M Groenen; Tim T Harkins; Javier Herrero; Steve Hoffmann; Hendrik-Jan Megens; Andrew Jiang; Pieter de Jong; Pete Kaiser; Heebal Kim; Kyu-Won Kim; Sungwon Kim; David Langenberger; Mi-Kyung Lee; Taeheon Lee; Shrinivasrao Mane; Guillaume Marcais; Manja Marz; Audrey P McElroy; Thero Modise; Mikhail Nefedov; Cédric Notredame; Ian R Paton; William S Payne; Geo Pertea; Dennis Prickett; Daniela Puiu; Dan Qioa; Emanuele Raineri; Magali Ruffier; Steven L Salzberg; Michael C Schatz; Chantel Scheuring; Carl J Schmidt; Steven Schroeder; Stephen M J Searle; Edward J Smith; Jacqueline Smith; Tad S Sonstegard; Peter F Stadler; Hakim Tafer; Zhijian Jake Tu; Curtis P Van Tassell; Albert J Vilella; Kelly P Williams; James A Yorke; Liqing Zhang; Hong-Bin Zhang; Xiaojun Zhang; Yang Zhang; Kent M Reed
Journal: PLoS Biol Date: 2010-09-07 Impact factor: 8.029

Review 6. Integrating genomes, brain and behavior in the study of songbirds.

Authors: David F Clayton; Christopher N Balakrishnan; Sarah E London
Journal: Curr Biol Date: 2009-09-29 Impact factor: 10.834

7. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

Authors:
Journal: Nature Date: 2004-12-09 Impact factor: 49.962

8. Rfam 11.0: 10 years of RNA families.

Authors: Sarah W Burge; Jennifer Daub; Ruth Eberhardt; John Tate; Lars Barquist; Eric P Nawrocki; Sean R Eddy; Paul P Gardner; Alex Bateman
Journal: Nucleic Acids Res Date: 2012-11-03 Impact factor: 16.971

9. miRBase: annotating high confidence microRNAs using deep sequencing data.

Authors: Ana Kozomara; Sam Griffiths-Jones
Journal: Nucleic Acids Res Date: 2013-11-25 Impact factor: 16.971

10. A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene.

Authors: Yvette A Halley; Scot E Dowd; Jared E Decker; Paul M Seabury; Eric Bhattarai; Charles D Johnson; Dale Rollins; Ian R Tizard; Donald J Brightsmith; Markus J Peterson; Jeremy F Taylor; Christopher M Seabury
Journal: PLoS One Date: 2014-03-12 Impact factor: 3.240

39 in total

Review 1. Sustainable intensification of indigenous village chicken production system: matching the genotype with the environment.

Authors: Takele Taye Desta
Journal: Trop Anim Health Prod Date: 2021-05-22 Impact factor: 1.559

Review 2. Transcription of highly repetitive tandemly organized DNA in amphibians and birds: A historical overview and modern concepts.

Authors: Irina Trofimova; Alla Krasikova
Journal: RNA Biol Date: 2016-10-20 Impact factor: 4.652

3. New high copy tandem repeat in the content of the chicken W chromosome.

Authors: Aleksey S Komissarov; Svetlana A Galkina; Elena I Koshel; Maria M Kulak; Aleksander G Dyomin; Stephen J O'Brien; Elena R Gaginskaya; Alsu F Saifitdinova
Journal: Chromosoma Date: 2017-09-26 Impact factor: 4.316

4. 3D organization of chicken genome demonstrates evolutionary conservation of topologically associated domains and highlights unique architecture of erythrocytes' chromatin.

Authors: Veniamin Fishman; Nariman Battulin; Miroslav Nuriddinov; Antonina Maslova; Anna Zlotina; Anton Strunov; Darya Chervyakova; Alexey Korablev; Oleg Serov; Alla Krasikova
Journal: Nucleic Acids Res Date: 2019-01-25 Impact factor: 16.971

5. Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium.

Authors: R J Pengelly; A A Gheyas; R Kuo; E Mossotto; E G Seaby; D W Burt; S Ennis; A Collins
Journal: Heredity (Edinb) Date: 2016-07-06 Impact factor: 3.821

6. Divergence in gene expression within and between two closely related flycatcher species.

Authors: Severin Uebbing; Axel Künstner; Hannu Mäkinen; Niclas Backström; Paulina Bolivar; Reto Burri; Ludovic Dutoit; Carina F Mugal; Alexander Nater; Bronwen Aken; Paul Flicek; Fergal J Martin; Stephen M J Searle; Hans Ellegren
Journal: Mol Ecol Date: 2016-04-02 Impact factor: 6.185

7. Chicken embryonic stem cells and primordial germ cells display different heterochromatic histone marks than their mammalian counterparts.

Authors: Clémence Kress; Guillaume Montillet; Christian Jean; Aurélie Fuet; Bertrand Pain
Journal: Epigenetics Chromatin Date: 2016-02-10 Impact factor: 4.954

8. gEVAL - a web-based browser for evaluating genome assemblies.

Authors: William Chow; Kim Brugger; Mario Caccamo; Ian Sealy; James Torrance; Kerstin Howe
Journal: Bioinformatics Date: 2016-04-07 Impact factor: 6.937

9. Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools.

Authors: Sébastien Guizard; Benoît Piégu; Peter Arensburger; Florian Guillou; Yves Bigot
Journal: BMC Genomics Date: 2016-08-19 Impact factor: 3.969

10. The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3.

Authors: Pierre-François Roux; Laure Frésard; Morgane Boutin; Sophie Leroux; Christophe Klopp; Anis Djari; Diane Esquerré; Pascal G P Martin; Tatiana Zerjal; David Gourichon; Frédérique Pitel; Sandrine Lagarrigue
Journal: G3 (Bethesda) Date: 2015-12-04 Impact factor: 3.154