Literature DB >> 19788884

Integrating genomes, brain and behavior in the study of songbirds.

David F Clayton1, Christopher N Balakrishnan, Sarah E London.   

Abstract

Songbirds share some essential traits but are extraordinarily diverse, allowing comparative analyses aimed at identifying specific genotype-phenotype associations. This diversity encompasses traits like vocal communication and complex social behaviors that are of great interest to humans, but that are not well represented in other accessible research organisms. Many songbirds are readily observable in nature and thus afford unique insight into the links between environment and organism. The distinctive organization of the songbird brain will facilitate analysis of genomic links to brain and behavior. Access to the zebra finch genome sequence will, therefore, prompt new questions and provide the ability to answer those questions.

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Year:  2009        PMID: 19788884      PMCID: PMC2890260          DOI: 10.1016/j.cub.2009.07.006

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  83 in total

1.  Behaviourally driven gene expression reveals song nuclei in hummingbird brain.

Authors:  E D Jarvis; S Ribeiro; M L da Silva; D Ventura; J Vielliard; C V Mello
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

2.  Cross-species overgo hybridization and comparative physical mapping within avian genomes.

Authors:  M N Romanov; J B Dodgson
Journal:  Anim Genet       Date:  2006-08       Impact factor: 3.169

3.  For whom the bird sings: context-dependent gene expression.

Authors:  E D Jarvis; C Scharff; M R Grossman; J A Ramos; F Nottebohm
Journal:  Neuron       Date:  1998-10       Impact factor: 17.173

4.  Songbird genomics: analysis of 45 kb upstream of a polymorphic Mhc class II gene in red-winged blackbirds (Agelaius phoeniceus).

Authors:  J S Gasper; T Shiina; H Inoko; S V Edwards
Journal:  Genomics       Date:  2001-07       Impact factor: 5.736

5.  Molecular mapping of brain areas involved in parrot vocal communication.

Authors:  E D Jarvis; C V Mello
Journal:  J Comp Neurol       Date:  2000-03-27       Impact factor: 3.215

6.  Speciational history of Australian grass finches (Poephila) inferred from thirty gene trees.

Authors:  W Bryan Jennings; Scott V Edwards
Journal:  Evolution       Date:  2005-09       Impact factor: 3.694

7.  Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus).

Authors:  June Y Lee; Scott V Edwards
Journal:  Evolution       Date:  2008-12       Impact factor: 3.694

8.  Audience drives male songbird response to partner's voice.

Authors:  Clémentine Vignal; Nicolas Mathevon; Stéphane Mottin
Journal:  Nature       Date:  2004-07-22       Impact factor: 49.962

9.  Recombination and nucleotide diversity in the sex chromosomal pseudoautosomal region of the emu, Dromaius novaehollandiae.

Authors:  Daniel E Janes; Tariq Ezaz; Jennifer A Marshall Graves; Scott V Edwards
Journal:  J Hered       Date:  2008-09-04       Impact factor: 2.645

10.  Origin of avian genome size and structure in non-avian dinosaurs.

Authors:  Chris L Organ; Andrew M Shedlock; Andrew Meade; Mark Pagel; Scott V Edwards
Journal:  Nature       Date:  2007-03-08       Impact factor: 49.962

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  29 in total

1.  The singing genome.

Authors:  H Ellegren
Journal:  Heredity (Edinb)       Date:  2010-09-08       Impact factor: 3.821

2.  Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry.

Authors:  Kensey R Amaya; Jonathan V Sweedler; David F Clayton
Journal:  J Neurochem       Date:  2011-05-19       Impact factor: 5.372

3.  Transgenic songbirds with suppressed or enhanced activity of CREB transcription factor.

Authors:  Kentaro Abe; Sumiko Matsui; Dai Watanabe
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-05       Impact factor: 11.205

4.  Experience restores innate female preference for male ultrasonic vocalizations.

Authors:  K N Shepard; R C Liu
Journal:  Genes Brain Behav       Date:  2011-02       Impact factor: 3.449

5.  Impact of experience-dependent and -independent factors on gene expression in songbird brain.

Authors:  Jenny Drnevich; Kirstin L Replogle; Peter Lovell; Thomas P Hahn; Frank Johnson; Thomas G Mast; Ernest Nordeen; Kathy Nordeen; Christy Strand; Sarah E London; Motoko Mukai; John C Wingfield; Arthur P Arnold; Gregory F Ball; Eliot A Brenowitz; Juli Wade; Claudio V Mello; David F Clayton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

6.  The genome of a songbird.

Authors:  Wesley C Warren; David F Clayton; Hans Ellegren; Arthur P Arnold; Ladeana W Hillier; Axel Künstner; Steve Searle; Simon White; Albert J Vilella; Susan Fairley; Andreas Heger; Lesheng Kong; Chris P Ponting; Erich D Jarvis; Claudio V Mello; Pat Minx; Peter Lovell; Tarciso A F Velho; Margaret Ferris; Christopher N Balakrishnan; Saurabh Sinha; Charles Blatti; Sarah E London; Yun Li; Ya-Chi Lin; Julia George; Jonathan Sweedler; Bruce Southey; Preethi Gunaratne; Michael Watson; Kiwoong Nam; Niclas Backström; Linnea Smeds; Benoit Nabholz; Yuichiro Itoh; Osceola Whitney; Andreas R Pfenning; Jason Howard; Martin Völker; Bejamin M Skinner; Darren K Griffin; Liang Ye; William M McLaren; Paul Flicek; Victor Quesada; Gloria Velasco; Carlos Lopez-Otin; Xose S Puente; Tsviya Olender; Doron Lancet; Arian F A Smit; Robert Hubley; Miriam K Konkel; Jerilyn A Walker; Mark A Batzer; Wanjun Gu; David D Pollock; Lin Chen; Ze Cheng; Evan E Eichler; Jessica Stapley; Jon Slate; Robert Ekblom; Tim Birkhead; Terry Burke; David Burt; Constance Scharff; Iris Adam; Hugues Richard; Marc Sultan; Alexey Soldatov; Hans Lehrach; Scott V Edwards; Shiaw-Pyng Yang; Xiaoching Li; Tina Graves; Lucinda Fulton; Joanne Nelson; Asif Chinwalla; Shunfeng Hou; Elaine R Mardis; Richard K Wilson
Journal:  Nature       Date:  2010-04-01       Impact factor: 49.962

7.  Noninvasive diffusive optical imaging of the auditory response to birdsong in the zebra finch.

Authors:  James V Lee; Edward L Maclin; Kathy A Low; Gabriele Gratton; Monica Fabiani; David F Clayton
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2013-01-16       Impact factor: 1.836

8.  The zebra finch neuropeptidome: prediction, detection and expression.

Authors:  Fang Xie; Sarah E London; Bruce R Southey; Suresh P Annangudi; Andinet Amare; Sandra L Rodriguez-Zas; David F Clayton; Jonathan V Sweedler
Journal:  BMC Biol       Date:  2010-04-01       Impact factor: 7.431

9.  Evolutionary analysis and expression profiling of zebra finch immune genes.

Authors:  Robert Ekblom; Lisa French; Jon Slate; Terry Burke
Journal:  Genome Biol Evol       Date:  2010-09-30       Impact factor: 3.416

10.  Digital gene expression analysis of the zebra finch genome.

Authors:  Robert Ekblom; Christopher N Balakrishnan; Terry Burke; Jon Slate
Journal:  BMC Genomics       Date:  2010-04-01       Impact factor: 3.969

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