Literature DB >> 26279939

Crystal structure of 2-amino-4-phenyl-4H-benzo[h]chromene-3-carbo-nitrile.

Shaaban K Mohamed1, Peter N Horton2, Mehmet Akkurt3, Sabry H H Younes4, Mustafa R Albayati5.   

Abstract

In the title compound, C20H14N2O, the plane of the phenyl ring is almost normal to that of the naphthalene ring system, forming a dihedral angle of 83.15 (8)°. The 4H-pyran ring fused with the naphthalene ring system has a flattened boat conformation. In the crystal, mol-ecules are linked by pairs of N-H⋯N hydrogen bonds, forming inversion dimers with an R 2 (2)(12) ring motif. The dimers are connected by C-H⋯π inter-actions, forming supra-molecular chains along [010].

Entities:  

Keywords:  C—H⋯π inter­actions; amino­chromene; crystal structure; fused chromene; hydrogen bonding

Year:  2015        PMID: 26279939      PMCID: PMC4518988          DOI: 10.1107/S2056989015011536

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For synthesis of chromene-containing compounds, see: Elagamey et al. (1988 ▸); El-Maghraby (2014 ▸). For industrial applications of amino­chromenes, see: Ellis (1977 ▸); Hafez et al. (1987 ▸). For various biological activities of fused chromenes, see: Hiramoto et al. (1997 ▸); Bianchi & Tava (1987 ▸); Eiden & Denk (1991 ▸); Smith et al. (1998 ▸); Taylor et al. (1998 ▸). For the crystal structure of the isomer of the title compound, 3-amino-1-phenyl-1H-benzo[f]chromene-2-carbo­nitrile, see: Akkurt et al. (2013 ▸).

Experimental

Crystal data

C20H14N2O M = 298.33 Monoclinic, a = 9.1662 (1) Å b = 5.7246 (1) Å c = 13.9177 (2) Å β = 90.153 (1)° V = 730.30 (2) Å3 Z = 2 Cu Kα radiation μ = 0.67 mm−1 T = 100 K 0.28 × 0.13 × 0.10 mm

Data collection

Rigaku AFC11 diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▸) T min = 0.883, T max = 1.000 5778 measured reflections 2201 independent reflections 2184 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.093 S = 1.09 2201 reflections 216 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack x determined using 775 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: 0.2 (3)

Data collection: CrystalClearSM Expert (Rigaku, 2012 ▸); cell refinement: CrystalClearSM Expert; data reduction: CrystalClearSM Expert; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015011536/tk5369sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015011536/tk5369Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011536/tk5369Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015011536/tk5369fig1.tif View of the title compound with the atom-numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015011536/tk5369fig2.tif View of the dimers formed by N—H⋯O hydrogen bonds. CCDC reference: 1406770 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H14N2OF(000) = 312
Mr = 298.33Dx = 1.357 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 5573 reflections
a = 9.1662 (1) Åθ = 6.3–66.6°
b = 5.7246 (1) ŵ = 0.67 mm1
c = 13.9177 (2) ÅT = 100 K
β = 90.153 (1)°Block, brown
V = 730.30 (2) Å30.28 × 0.13 × 0.10 mm
Z = 2
Rigaku AFC11 diffractometer2201 independent reflections
Radiation source: Rotating Anode2184 reflections with I > 2σ(I)
Detector resolution: 22.2222 pixels mm-1Rint = 0.029
profile data from ω–scansθmax = 66.7°, θmin = 4.8°
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012)h = −10→10
Tmin = 0.883, Tmax = 1.000k = −6→6
5778 measured reflectionsl = −16→16
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.031w = 1/[σ2(FO2) + (0.0642P)2 + 0.1186P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.093(Δ/σ)max < 0.001
S = 1.09Δρmax = 0.14 e Å3
2201 reflectionsΔρmin = −0.15 e Å3
216 parametersAbsolute structure: Flack x determined using 775 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: 0.2 (3)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.64120 (15)0.8755 (3)0.32053 (9)0.0250 (4)
N10.5228 (2)0.9831 (4)0.18837 (13)0.0279 (6)
N20.58898 (19)0.5238 (4)0.01142 (12)0.0305 (6)
C10.6097 (2)0.8195 (4)0.22720 (13)0.0223 (5)
C20.6647 (2)0.6252 (4)0.18462 (14)0.0228 (6)
C30.7792 (2)0.4700 (4)0.23142 (13)0.0222 (6)
C40.7851 (2)0.5235 (4)0.33777 (13)0.0225 (6)
C50.8612 (2)0.3703 (4)0.40074 (14)0.0264 (6)
C60.8631 (2)0.4068 (4)0.49782 (15)0.0286 (6)
C70.7877 (2)0.5997 (4)0.53815 (14)0.0255 (6)
C80.7844 (2)0.6408 (5)0.63859 (14)0.0297 (6)
C90.7137 (2)0.8309 (5)0.67554 (14)0.0301 (6)
C100.6403 (2)0.9868 (5)0.61433 (15)0.0307 (6)
C110.6388 (2)0.9514 (4)0.51680 (14)0.0275 (6)
C120.7134 (2)0.7592 (4)0.47686 (14)0.0239 (6)
C130.7165 (2)0.7126 (4)0.37642 (13)0.0226 (6)
C140.6217 (2)0.5720 (4)0.08901 (13)0.0241 (6)
C150.9263 (2)0.4943 (4)0.18151 (13)0.0222 (6)
C160.9754 (2)0.3182 (4)0.12136 (13)0.0261 (6)
C171.1057 (2)0.3423 (5)0.07107 (14)0.0301 (6)
C181.1876 (2)0.5433 (5)0.08102 (14)0.0301 (6)
C191.1396 (2)0.7208 (5)0.14112 (14)0.0293 (6)
C201.0097 (2)0.6961 (4)0.19070 (14)0.0260 (6)
H1A0.474 (3)1.088 (5)0.2297 (18)0.034 (7)*
H1B0.501 (3)0.971 (6)0.125 (2)0.040 (7)*
H30.746600.304300.223900.0270*
H50.911800.240000.374800.0320*
H60.915200.302600.538500.0340*
H80.832000.534700.680800.0360*
H90.714200.857600.742900.0360*
H100.591301.118000.640700.0370*
H110.587401.056500.476200.0330*
H160.919400.179500.114300.0310*
H171.138300.220500.030000.0360*
H181.276500.560200.046800.0360*
H191.195800.859100.148200.0350*
H200.977100.818500.231500.0310*
U11U22U33U12U13U23
O10.0306 (8)0.0258 (8)0.0186 (6)0.0031 (7)−0.0059 (5)−0.0008 (6)
N10.0309 (9)0.0322 (11)0.0205 (9)0.0045 (9)−0.0056 (7)−0.0012 (8)
N20.0297 (9)0.0375 (12)0.0243 (9)0.0007 (9)−0.0046 (7)−0.0041 (8)
C10.0219 (9)0.0273 (11)0.0178 (8)−0.0041 (9)−0.0026 (7)0.0026 (8)
C20.0202 (9)0.0293 (12)0.0190 (9)−0.0025 (9)−0.0022 (7)0.0002 (8)
C30.0226 (9)0.0205 (10)0.0236 (10)−0.0015 (9)−0.0021 (7)−0.0009 (8)
C40.0191 (9)0.0272 (12)0.0213 (9)−0.0039 (8)−0.0007 (7)0.0010 (8)
C50.0249 (9)0.0270 (12)0.0272 (10)0.0003 (10)0.0001 (7)0.0025 (9)
C60.0276 (10)0.0325 (13)0.0256 (10)−0.0010 (10)−0.0044 (8)0.0074 (9)
C70.0220 (9)0.0321 (12)0.0223 (9)−0.0050 (9)−0.0013 (7)0.0029 (9)
C80.0259 (10)0.0414 (14)0.0219 (9)−0.0058 (10)−0.0031 (8)0.0058 (9)
C90.0275 (10)0.0427 (14)0.0200 (9)−0.0106 (11)0.0002 (7)−0.0028 (10)
C100.0296 (10)0.0356 (13)0.0268 (10)−0.0044 (11)0.0024 (8)−0.0060 (9)
C110.0280 (10)0.0298 (12)0.0246 (10)−0.0018 (10)−0.0018 (8)−0.0021 (9)
C120.0202 (9)0.0301 (12)0.0214 (9)−0.0064 (9)−0.0012 (7)0.0006 (8)
C130.0214 (9)0.0251 (11)0.0213 (9)−0.0029 (9)−0.0031 (7)0.0036 (8)
C140.0226 (9)0.0263 (11)0.0235 (10)−0.0010 (9)0.0001 (7)0.0003 (9)
C150.0227 (10)0.0265 (11)0.0173 (8)0.0004 (9)−0.0025 (7)0.0029 (8)
C160.0301 (10)0.0250 (12)0.0231 (9)0.0024 (10)−0.0032 (7)−0.0016 (8)
C170.0319 (11)0.0346 (13)0.0238 (9)0.0069 (10)0.0008 (7)−0.0020 (10)
C180.0245 (10)0.0429 (14)0.0230 (9)0.0041 (10)0.0002 (7)0.0067 (9)
C190.0264 (10)0.0328 (12)0.0286 (10)−0.0040 (10)−0.0030 (8)0.0056 (9)
C200.0274 (10)0.0263 (12)0.0244 (10)0.0001 (10)−0.0001 (8)−0.0024 (9)
O1—C11.368 (2)C11—C121.410 (3)
O1—C131.396 (3)C12—C131.424 (3)
N1—C11.342 (3)C15—C201.391 (3)
N2—C141.154 (3)C15—C161.386 (3)
C1—C21.358 (3)C16—C171.393 (3)
N1—H1B0.91 (3)C17—C181.381 (4)
N1—H1A0.95 (3)C18—C191.388 (3)
C2—C141.420 (3)C19—C201.385 (3)
C2—C31.520 (3)C3—H31.0000
C3—C41.512 (3)C5—H50.9500
C3—C151.525 (3)C6—H60.9500
C4—C131.363 (3)C8—H80.9500
C4—C51.422 (3)C9—H90.9500
C5—C61.367 (3)C10—H100.9500
C6—C71.419 (3)C11—H110.9500
C7—C121.422 (3)C16—H160.9500
C7—C81.418 (3)C17—H170.9500
C8—C91.368 (4)C18—H180.9500
C9—C101.404 (3)C19—H190.9500
C10—C111.373 (3)C20—H200.9500
C1—O1—C13118.39 (17)C3—C15—C20121.36 (18)
O1—C1—N1110.02 (18)C16—C15—C20118.70 (17)
O1—C1—C2121.91 (18)C15—C16—C17120.8 (2)
N1—C1—C2128.06 (18)C16—C17—C18119.9 (2)
C1—N1—H1B118 (2)C17—C18—C19119.82 (18)
H1A—N1—H1B123 (3)C18—C19—C20120.0 (2)
C1—N1—H1A118.7 (16)C15—C20—C19120.8 (2)
C1—C2—C3123.25 (17)C2—C3—H3108.00
C1—C2—C14118.83 (19)C4—C3—H3108.00
C3—C2—C14117.76 (18)C15—C3—H3108.00
C2—C3—C15111.21 (16)C4—C5—H5119.00
C4—C3—C15113.46 (15)C6—C5—H5119.00
C2—C3—C4108.89 (17)C5—C6—H6120.00
C3—C4—C13122.12 (18)C7—C6—H6120.00
C3—C4—C5119.65 (19)C7—C8—H8120.00
C5—C4—C13118.21 (17)C9—C8—H8120.00
C4—C5—C6121.3 (2)C8—C9—H9120.00
C5—C6—C7120.32 (19)C10—C9—H9120.00
C8—C7—C12118.3 (2)C9—C10—H10120.00
C6—C7—C8122.1 (2)C11—C10—H10120.00
C6—C7—C12119.69 (18)C10—C11—H11120.00
C7—C8—C9120.9 (2)C12—C11—H11120.00
C8—C9—C10120.29 (19)C15—C16—H16120.00
C9—C10—C11120.6 (2)C17—C16—H16120.00
C10—C11—C12120.1 (2)C16—C17—H17120.00
C11—C12—C13122.97 (19)C18—C17—H17120.00
C7—C12—C11119.76 (18)C17—C18—H18120.00
C7—C12—C13117.26 (19)C19—C18—H18120.00
O1—C13—C12114.26 (18)C18—C19—H19120.00
O1—C13—C4122.59 (16)C20—C19—H19120.00
C4—C13—C12123.14 (19)C15—C20—H20120.00
N2—C14—C2178.3 (2)C19—C20—H20120.00
C3—C15—C16119.85 (19)
C13—O1—C1—N1172.70 (17)C4—C5—C6—C70.3 (3)
C13—O1—C1—C2−8.3 (3)C5—C6—C7—C8178.6 (2)
C1—O1—C13—C413.6 (3)C5—C6—C7—C12−1.8 (3)
C1—O1—C13—C12−165.44 (17)C6—C7—C8—C9178.5 (2)
O1—C1—C2—C3−7.7 (3)C12—C7—C8—C9−1.1 (3)
O1—C1—C2—C14176.97 (18)C6—C7—C12—C11−179.80 (18)
N1—C1—C2—C3171.1 (2)C6—C7—C12—C131.3 (3)
N1—C1—C2—C14−4.2 (3)C8—C7—C12—C11−0.2 (3)
C1—C2—C3—C416.6 (3)C8—C7—C12—C13−179.15 (19)
C1—C2—C3—C15−109.1 (2)C7—C8—C9—C101.3 (3)
C14—C2—C3—C4−168.01 (18)C8—C9—C10—C11−0.2 (3)
C14—C2—C3—C1566.3 (2)C9—C10—C11—C12−1.1 (3)
C2—C3—C4—C5167.12 (18)C10—C11—C12—C71.3 (3)
C2—C3—C4—C13−11.3 (3)C10—C11—C12—C13−179.9 (2)
C15—C3—C4—C5−68.5 (3)C7—C12—C13—O1179.84 (17)
C15—C3—C4—C13113.1 (2)C7—C12—C13—C40.8 (3)
C2—C3—C15—C16−105.1 (2)C11—C12—C13—O10.9 (3)
C2—C3—C15—C2071.3 (2)C11—C12—C13—C4−178.1 (2)
C4—C3—C15—C16131.7 (2)C3—C15—C16—C17176.54 (18)
C4—C3—C15—C20−51.9 (3)C20—C15—C16—C170.1 (3)
C3—C4—C5—C6−176.86 (18)C3—C15—C20—C19−176.69 (18)
C13—C4—C5—C61.6 (3)C16—C15—C20—C19−0.3 (3)
C3—C4—C13—O1−2.7 (3)C15—C16—C17—C180.1 (3)
C3—C4—C13—C12176.26 (18)C16—C17—C18—C19−0.1 (3)
C5—C4—C13—O1178.81 (18)C17—C18—C19—C20−0.2 (3)
C5—C4—C13—C12−2.2 (3)C18—C19—C20—C150.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1B···N2i0.91 (3)2.09 (3)2.970 (2)163 (3)
C9—H9···Cg1ii0.952.883.574 (2)131
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C15C20 phenyl ring.

DHA DHHA D A DHA
N1H1BN2i 0.91(3)2.09(3)2.970(2)163(3)
C9H9Cg1ii 0.952.883.574(2)131

Symmetry codes: (i) ; (ii) .

  4 in total

1.  [Synthesis of CNS-activity of pyran derivatives: 6,8-dioxabicyclo(3,2,1)octane].

Authors:  F Eiden; F Denk
Journal:  Arch Pharm (Weinheim)       Date:  1991-06       Impact factor: 3.751

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

3.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

4.  3-Amino-1-phenyl-1H-benzo[f]chromene-2-carbonitrile.

Authors:  Mehmet Akkurt; Alan R Kennedy; Shaaban Kamel Mohamed; Sabry H H Younes; Gary J Miller
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20
  4 in total

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