Literature DB >> 26279934

Crystal structure of 1,2-bis-(2,6-di-methyl-phen-yl)-3-phenyl-guanidine.

Hongfei Han1, Zhiqiang Guo2, Xuehong Wei1.   

Abstract

In the title compound, C23H25N3, the dihedral angles between the planes of the benzene ring and the two substituent di-methyl-phenyl rings are 60.94 (7)° and 88.08 (7)°, and the dihedral angle between the planes of the two di-methyl-phenyl rings is 58.01 (7)°. In the crystal, weak C-H⋯N inter-actions exist between adjacent mol-ecules. One of the di-methyl-phenyl rings has a small amount of π-π overlap with the phenyl ring of an adjacent mol-ecule [centroid-to-centroid distance = 3.9631 (12) Å].

Entities:  

Keywords:  crystal structure; guanidines; hydrogen bonding; π–π overlap

Year:  2015        PMID: 26279934      PMCID: PMC4518950          DOI: 10.1107/S2056989015011822

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For similar structures of various related compounds, see: Boeré et al. (2000 ▸); Brazeau et al. (2012 ▸); Ghosh et al. (2008 ▸); Han & Huynh (2009 ▸); Chlupatý & Padělková (2014 ▸); Yildirim et al. (2007 ▸); Zhang et al. (2009 ▸). For applications of guanidines, see: Berlinck (2002 ▸); Heys et al. (2000 ▸); Laeckmann et al. (2002 ▸); Kelley et al. (2001 ▸); Moroni et al. (2001 ▸).

Experimental

Crystal data

C23H25N3 M = 343.46 Orthorhombic, a = 19.003 (7) Å b = 7.924 (3) Å c = 13.056 (5) Å V = 1966.0 (13) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 194 K 0.35 × 0.33 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.976, T max = 0.980 10737 measured reflections 3547 independent reflections 2649 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.104 S = 1.02 3547 reflections 239 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015011822/pk2556sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015011822/pk2556Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011822/pk2556Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015011822/pk2556fig1.tif The mol­ecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. CCDC reference: 1407910 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H25N3F(000) = 736
Mr = 343.46Dx = 1.160 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2316 reflections
a = 19.003 (7) Åθ = 2.8–23.5°
b = 7.924 (3) ŵ = 0.07 mm1
c = 13.056 (5) ÅT = 194 K
V = 1966.0 (13) Å3Block, colourless
Z = 40.35 × 0.33 × 0.30 mm
Bruker SMART CCD area-detector diffractometer3547 independent reflections
Radiation source: fine-focus sealed tube2649 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
φ and ω scansθmax = 25.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→23
Tmin = 0.976, Tmax = 0.980k = −9→5
10737 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0564P)2] where P = (Fo2 + 2Fc2)/3
3547 reflections(Δ/σ)max = 0.001
239 parametersΔρmax = 0.14 e Å3
1 restraintΔρmin = −0.14 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.51390 (8)0.8726 (2)0.22933 (14)0.0499 (4)
H10.50010.81290.28150.060*
N20.39761 (8)0.9417 (2)0.19326 (13)0.0470 (4)
N30.48706 (8)1.0319 (2)0.08715 (13)0.0494 (5)
H30.53001.01090.06800.059*
C10.58760 (9)0.8820 (3)0.21187 (15)0.0414 (5)
C20.62483 (11)1.0196 (3)0.24776 (18)0.0535 (6)
C30.69708 (12)1.0198 (4)0.2354 (2)0.0693 (7)
H3A0.72381.11360.25860.083*
C40.73035 (12)0.8867 (4)0.1904 (2)0.0695 (7)
H40.78010.88790.18400.083*
C50.69327 (12)0.7521 (4)0.15447 (18)0.0612 (6)
H50.71730.66140.12230.073*
C60.62094 (10)0.7464 (3)0.16442 (17)0.0482 (5)
C70.58943 (16)1.1640 (3)0.3014 (2)0.0825 (8)
H7A0.56311.12130.36050.124*
H7B0.55701.22020.25390.124*
H7C0.62501.24480.32470.124*
C80.57928 (15)0.5980 (3)0.1261 (2)0.0732 (7)
H8A0.54230.63750.07960.110*
H8B0.55780.53920.18430.110*
H8C0.61060.52040.08940.110*
C90.46259 (9)0.9480 (3)0.17228 (15)0.0392 (4)
C100.37336 (10)0.8594 (3)0.28195 (16)0.0470 (5)
C110.36221 (11)0.9503 (4)0.37126 (18)0.0592 (7)
C120.32944 (14)0.8739 (5)0.4525 (2)0.0830 (9)
H120.32140.93660.51330.100*
C130.30812 (15)0.7093 (6)0.4476 (3)0.0950 (12)
H130.28520.65840.50440.114*
C140.32015 (14)0.6189 (4)0.3606 (3)0.0918 (11)
H140.30590.50410.35800.110*
C150.35250 (11)0.6897 (3)0.2757 (2)0.0628 (7)
C160.38379 (16)1.1319 (4)0.3781 (2)0.0814 (9)
H16A0.37311.18880.31330.122*
H16B0.43441.13890.39160.122*
H16C0.35801.18680.43380.122*
C170.36204 (16)0.5931 (4)0.1775 (3)0.0942 (10)
H17A0.33810.65260.12170.141*
H17B0.34190.47990.18500.141*
H17C0.41230.58390.16190.141*
C180.44829 (10)1.1495 (3)0.02788 (14)0.0437 (5)
C190.37790 (11)1.1326 (3)0.00775 (16)0.0546 (6)
H190.35291.03720.03260.065*
C200.34337 (13)1.2550 (3)−0.04892 (17)0.0641 (7)
H200.29431.2446−0.06110.077*
C210.37888 (15)1.3896 (3)−0.0873 (2)0.0685 (7)
H210.35461.4731−0.12580.082*
C220.44980 (15)1.4048 (3)−0.07045 (19)0.0666 (7)
H220.47491.4976−0.09850.080*
C230.48466 (11)1.2853 (3)−0.01269 (16)0.0533 (5)
H230.53381.2964−0.00070.064*
U11U22U33U12U13U23
N10.0348 (8)0.0591 (10)0.0557 (10)0.0034 (8)0.0009 (8)0.0171 (9)
N20.0339 (9)0.0611 (11)0.0460 (10)0.0061 (8)0.0012 (7)0.0097 (9)
N30.0358 (9)0.0664 (12)0.0461 (9)0.0083 (8)0.0054 (7)0.0140 (10)
C10.0336 (10)0.0483 (11)0.0424 (11)−0.0002 (9)−0.0060 (8)0.0072 (10)
C20.0533 (12)0.0528 (13)0.0543 (13)−0.0053 (11)−0.0068 (11)0.0059 (11)
C30.0564 (14)0.0834 (19)0.0682 (15)−0.0248 (14)−0.0165 (13)0.0080 (15)
C40.0356 (11)0.111 (2)0.0622 (15)−0.0066 (13)−0.0028 (11)0.0113 (17)
C50.0477 (13)0.0820 (18)0.0540 (13)0.0115 (12)0.0023 (10)−0.0007 (13)
C60.0432 (11)0.0551 (13)0.0461 (11)0.0001 (10)−0.0039 (10)0.0016 (11)
C70.0967 (19)0.0517 (14)0.099 (2)0.0000 (14)−0.0121 (17)−0.0118 (17)
C80.0800 (18)0.0600 (17)0.0795 (17)−0.0056 (14)−0.0001 (14)−0.0135 (14)
C90.0368 (10)0.0428 (11)0.0379 (10)0.0029 (9)−0.0032 (9)−0.0003 (9)
C100.0295 (9)0.0615 (14)0.0498 (12)0.0091 (10)0.0007 (9)0.0086 (11)
C110.0449 (13)0.0842 (18)0.0483 (13)0.0202 (13)0.0008 (10)0.0096 (13)
C120.0684 (18)0.127 (3)0.0534 (15)0.0326 (18)0.0107 (13)0.0181 (18)
C130.0656 (17)0.129 (3)0.091 (2)0.0279 (19)0.0308 (16)0.058 (2)
C140.0606 (16)0.078 (2)0.137 (3)0.0074 (15)0.0213 (18)0.044 (2)
C150.0420 (12)0.0628 (15)0.0837 (17)0.0046 (11)0.0078 (12)0.0096 (15)
C160.088 (2)0.085 (2)0.0710 (17)0.0123 (17)−0.0064 (15)−0.0176 (17)
C170.0784 (18)0.0710 (18)0.133 (3)−0.0084 (15)0.015 (2)−0.023 (2)
C180.0450 (11)0.0506 (13)0.0355 (10)0.0058 (9)0.0019 (9)0.0008 (10)
C190.0453 (12)0.0729 (17)0.0455 (12)0.0040 (11)−0.0026 (9)0.0083 (12)
C200.0533 (13)0.0902 (19)0.0487 (12)0.0137 (13)−0.0040 (11)0.0067 (14)
C210.0819 (18)0.0696 (18)0.0541 (14)0.0251 (15)−0.0055 (13)0.0062 (14)
C220.090 (2)0.0497 (15)0.0606 (15)0.0046 (13)−0.0032 (13)0.0051 (13)
C230.0574 (13)0.0517 (13)0.0509 (12)−0.0007 (11)−0.0028 (11)−0.0014 (12)
N1—C91.365 (2)C11—C121.370 (4)
N1—C11.421 (2)C11—C161.499 (4)
N1—H10.8700C12—C131.368 (5)
N2—C91.266 (2)C12—H120.9500
N2—C101.407 (3)C13—C141.363 (5)
N3—C91.376 (2)C13—H130.9500
N3—C181.418 (3)C14—C151.386 (4)
N3—H30.8699C14—H140.9500
C1—C21.381 (3)C15—C171.503 (4)
C1—C61.393 (3)C16—H16A0.9800
C2—C31.382 (3)C16—H16B0.9800
C2—C71.501 (4)C16—H16C0.9800
C3—C41.363 (4)C17—H17A0.9800
C3—H3A0.9500C17—H17B0.9800
C4—C51.362 (3)C17—H17C0.9800
C4—H40.9500C18—C191.370 (3)
C5—C61.381 (3)C18—C231.385 (3)
C5—H50.9500C19—C201.385 (3)
C6—C81.503 (3)C19—H190.9500
C7—H7A0.9800C20—C211.358 (3)
C7—H7B0.9800C20—H200.9500
C7—H7C0.9800C21—C221.371 (4)
C8—H8A0.9800C21—H210.9500
C8—H8B0.9800C22—C231.380 (3)
C8—H8C0.9800C22—H220.9500
C10—C111.387 (3)C23—H230.9500
C10—C151.405 (3)
C9—N1—C1126.42 (17)C12—C11—C16120.2 (3)
C9—N1—H1116.8C10—C11—C16120.5 (2)
C1—N1—H1116.8C13—C12—C11121.3 (3)
C9—N2—C10121.07 (16)C13—C12—H12119.3
C9—N3—C18125.64 (16)C11—C12—H12119.3
C9—N3—H3117.2C14—C13—C12119.3 (3)
C18—N3—H3117.2C14—C13—H13120.3
C2—C1—C6121.78 (17)C12—C13—H13120.3
C2—C1—N1119.46 (19)C13—C14—C15121.9 (3)
C6—C1—N1118.63 (17)C13—C14—H14119.0
C1—C2—C3118.0 (2)C15—C14—H14119.0
C1—C2—C7122.0 (2)C14—C15—C10117.8 (3)
C3—C2—C7119.9 (2)C14—C15—C17122.0 (3)
C4—C3—C2120.7 (2)C10—C15—C17120.2 (2)
C4—C3—H3A119.7C11—C16—H16A109.5
C2—C3—H3A119.7C11—C16—H16B109.5
C5—C4—C3121.0 (2)H16A—C16—H16B109.5
C5—C4—H4119.5C11—C16—H16C109.5
C3—C4—H4119.5H16A—C16—H16C109.5
C4—C5—C6120.5 (2)H16B—C16—H16C109.5
C4—C5—H5119.7C15—C17—H17A109.5
C6—C5—H5119.7C15—C17—H17B109.5
C5—C6—C1118.0 (2)H17A—C17—H17B109.5
C5—C6—C8121.2 (2)C15—C17—H17C109.5
C1—C6—C8120.80 (18)H17A—C17—H17C109.5
C2—C7—H7A109.5H17B—C17—H17C109.5
C2—C7—H7B109.5C19—C18—C23119.3 (2)
H7A—C7—H7B109.5C19—C18—N3123.2 (2)
C2—C7—H7C109.5C23—C18—N3117.43 (18)
H7A—C7—H7C109.5C18—C19—C20119.8 (2)
H7B—C7—H7C109.5C18—C19—H19120.1
C6—C8—H8A109.5C20—C19—H19120.1
C6—C8—H8B109.5C21—C20—C19120.8 (2)
H8A—C8—H8B109.5C21—C20—H20119.6
C6—C8—H8C109.5C19—C20—H20119.6
H8A—C8—H8C109.5C20—C21—C22119.9 (2)
H8B—C8—H8C109.5C20—C21—H21120.1
N2—C9—N1124.15 (18)C22—C21—H21120.1
N2—C9—N3121.58 (17)C21—C22—C23120.0 (2)
N1—C9—N3114.26 (16)C21—C22—H22120.0
C11—C10—C15120.2 (2)C23—C22—H22120.0
C11—C10—N2120.1 (2)C22—C23—C18120.2 (2)
C15—C10—N2119.2 (2)C22—C23—H23119.9
C12—C11—C10119.4 (3)C18—C23—H23119.9
C9—N1—C1—C282.9 (3)C15—C10—C11—C12−1.3 (3)
C9—N1—C1—C6−101.1 (2)N2—C10—C11—C12170.91 (19)
C6—C1—C2—C30.0 (3)C15—C10—C11—C16−179.4 (2)
N1—C1—C2—C3175.9 (2)N2—C10—C11—C16−7.3 (3)
C6—C1—C2—C7−178.4 (2)C10—C11—C12—C130.7 (4)
N1—C1—C2—C7−2.5 (3)C16—C11—C12—C13178.9 (3)
C1—C2—C3—C4−0.9 (4)C11—C12—C13—C140.5 (4)
C7—C2—C3—C4177.5 (2)C12—C13—C14—C15−1.0 (5)
C2—C3—C4—C51.4 (4)C13—C14—C15—C100.4 (4)
C3—C4—C5—C6−1.0 (4)C13—C14—C15—C17−176.4 (3)
C4—C5—C6—C10.1 (3)C11—C10—C15—C140.7 (3)
C4—C5—C6—C8−179.4 (2)N2—C10—C15—C14−171.5 (2)
C2—C1—C6—C50.4 (3)C11—C10—C15—C17177.6 (2)
N1—C1—C6—C5−175.5 (2)N2—C10—C15—C175.4 (3)
C2—C1—C6—C8179.9 (2)C9—N3—C18—C19−37.2 (3)
N1—C1—C6—C84.0 (3)C9—N3—C18—C23144.1 (2)
C10—N2—C9—N12.6 (3)C23—C18—C19—C20−2.8 (3)
C10—N2—C9—N3−178.32 (19)N3—C18—C19—C20178.5 (2)
C1—N1—C9—N2−177.0 (2)C18—C19—C20—C211.8 (3)
C1—N1—C9—N33.9 (3)C19—C20—C21—C220.3 (4)
C18—N3—C9—N215.3 (3)C20—C21—C22—C23−1.4 (4)
C18—N3—C9—N1−165.6 (2)C21—C22—C23—C180.4 (4)
C9—N2—C10—C1194.0 (2)C19—C18—C23—C221.8 (3)
C9—N2—C10—C15−93.7 (2)N3—C18—C23—C22−179.54 (19)
D—H···AD—HH···AD···AD—H···A
C4—H4···N2i0.952.613.457 (3)148
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C4H4N2i 0.952.613.457(3)148

Symmetry code: (i) .

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