Literature DB >> 25161571

2-[2,6-Bis(propan-2-yl)phen-yl]-1,3-di-cyclo-hexyl-guanidine.

Tomáš Chlupatý1, Zdeňka Padělková1.   

Abstract

In the title asymmetric di-cyclo-hexyl-phenyl-guanidine, C25H41N3, the central guanidine C atom deviates by only 0.004 (2) Å from the central plane defined by the three N atoms. The benzene and the cyclo-hexyl rings are rotated out of the central plane of the N3C unit by 85.63 (12)° (benzene) and 51.52 (9) and 49.37 (12)° (cyclohexyl). The crystal packing features only by van der Waals inter-actions.

Entities:  

Year:  2014        PMID: 25161571      PMCID: PMC4120537          DOI: 10.1107/S1600536814011611

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures of various related compounds, see: Shen et al. (2011 ▶); Ghosh et al. (2008 ▶); Yıldırım et al. (2007 ▶); Brazeau et al. (2012 ▶); Han & Huynh (2009 ▶); Tanatani et al. (1998 ▶); Zhang et al. (2009 ▶); Boere et al. (2000 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C25H41N3 M = 383.61 Monoclinic, a = 30.9001 (3) Å b = 9.9442 (5) Å c = 18.5260 (3) Å β = 124.962 (3)° V = 4665.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.06 mm−1 T = 150 K 0.45 × 0.18 × 0.18 mm

Data collection

Bruker–Nonius KappaCCD area-detector diffractometer Absorption correction: gaussian (Coppens, 1970 ▶) T min = 0.982, T max = 0.991 40512 measured reflections 5336 independent reflections 3272 reflections with I > 2σ(I) R int = 0.098

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.137 S = 1.06 5336 reflections 253 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.37 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶) and DENZO (Otwinowski & Minor, 1997 ▶); cell refinement: COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814011611/kp2469sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814011611/kp2469Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814011611/kp2469Isup3.cml CCDC reference: 1004128 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H41N3F(000) = 1696
Mr = 383.61Dx = 1.092 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 40662 reflections
a = 30.9001 (3) Åθ = 1–27.5°
b = 9.9442 (5) ŵ = 0.06 mm1
c = 18.5260 (3) ÅT = 150 K
β = 124.962 (3)°Needle, colourless
V = 4665.3 (3) Å30.45 × 0.18 × 0.18 mm
Z = 8
Bruker–Nonius KappaCCD area-detector diffractometer5336 independent reflections
Radiation source: fine-focus sealed tube3272 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.098
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 2.2°
φ and ω scans to fill the Ewald sphereh = −40→37
Absorption correction: gaussian (Coppens, 1970)k = −12→12
Tmin = 0.982, Tmax = 0.991l = −24→24
40512 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0373P)2 + 6.0132P] where P = (Fo2 + 2Fc2)/3
5336 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.85963 (6)−0.00660 (16)0.09390 (11)0.0249 (4)
N20.91824 (6)0.12199 (17)0.22129 (11)0.0272 (4)
H20.94240.12310.21170.033*
C10.87631 (7)0.03532 (18)0.17160 (13)0.0230 (4)
N30.85204 (6)−0.00799 (17)0.21031 (11)0.0281 (4)
H30.86180.02470.26050.034*
C70.86512 (7)0.1607 (2)0.00225 (13)0.0259 (4)
C20.88288 (7)0.0413 (2)0.05185 (13)0.0242 (4)
C30.92155 (7)−0.0387 (2)0.05466 (13)0.0268 (4)
C40.93881 (8)−0.0019 (2)0.00274 (14)0.0335 (5)
H40.9635−0.05540.00270.040*
C200.81023 (8)−0.10825 (19)0.16858 (13)0.0246 (4)
H200.7872−0.08840.10540.029*
C250.77745 (8)−0.0977 (2)0.20611 (14)0.0292 (5)
H25A0.8000−0.11300.26920.035*
H25B0.7628−0.00790.19600.035*
C80.94246 (8)−0.1630 (2)0.11264 (14)0.0305 (5)
H80.9429−0.14340.16490.037*
C190.97612 (8)0.2886 (2)0.32971 (14)0.0347 (5)
H19A0.97570.33640.28370.042*
H19B1.00520.22520.35640.042*
C150.87852 (8)0.3080 (2)0.25502 (14)0.0309 (5)
H15A0.87370.35950.20640.037*
H15B0.84650.25670.23290.037*
C110.82506 (8)0.2511 (2)0.00116 (14)0.0284 (5)
H110.82380.22480.05090.034*
C140.92473 (7)0.2116 (2)0.28959 (13)0.0266 (4)
H140.92740.15620.33570.032*
C210.83129 (9)−0.2505 (2)0.17984 (16)0.0347 (5)
H21A0.8517−0.25650.15510.042*
H21B0.8545−0.27180.24210.042*
C100.99868 (9)−0.2004 (2)0.14496 (16)0.0408 (6)
H10A0.9990−0.23010.09600.049*
H10B1.0112−0.27140.18760.049*
H10C1.0212−0.12330.17160.049*
C60.88416 (8)0.1932 (2)−0.04814 (14)0.0337 (5)
H60.87260.2715−0.08170.040*
C50.91994 (8)0.1121 (2)−0.04892 (14)0.0368 (5)
H50.93140.1341−0.08420.044*
C160.88758 (9)0.4038 (2)0.32643 (15)0.0374 (5)
H16A0.85820.46600.30170.045*
H16B0.88930.35320.37280.045*
C240.73288 (8)−0.2005 (2)0.16355 (16)0.0394 (6)
H24A0.7143−0.19630.19150.047*
H24B0.7080−0.17770.10190.047*
C120.77015 (9)0.2305 (3)−0.08243 (16)0.0453 (6)
H12A0.74560.2881−0.08120.054*
H12B0.75970.1384−0.08610.054*
H12C0.77030.2521−0.13280.054*
C230.75267 (10)−0.3431 (2)0.17037 (17)0.0425 (6)
H23A0.7228−0.40350.13730.051*
H23B0.7734−0.37130.23150.051*
C90.90576 (10)−0.2825 (2)0.06648 (16)0.0441 (6)
H9A0.9059−0.30790.01660.053*
H9B0.8706−0.25790.04700.053*
H9C0.9175−0.35690.10660.053*
C130.84053 (10)0.3987 (2)0.01292 (19)0.0496 (7)
H13A0.83820.4305−0.03810.059*
H13B0.87610.40880.06400.059*
H13C0.81710.44990.02060.059*
C170.93828 (9)0.4821 (2)0.36433 (16)0.0429 (6)
H17A0.93510.53930.31910.052*
H17B0.94420.53940.41160.052*
C180.98491 (9)0.3882 (3)0.39960 (15)0.0427 (6)
H18A0.99080.33940.44990.051*
H18B1.01630.44100.41960.051*
C220.78632 (10)−0.3517 (2)0.13444 (18)0.0435 (6)
H22A0.8005−0.44190.14320.052*
H22B0.7645−0.33380.07170.052*
U11U22U33U12U13U23
N10.0297 (9)0.0247 (9)0.0258 (9)−0.0024 (7)0.0191 (8)−0.0014 (7)
N20.0262 (9)0.0324 (9)0.0287 (9)−0.0067 (8)0.0190 (8)−0.0076 (8)
C10.0243 (10)0.0210 (10)0.0273 (11)0.0013 (8)0.0169 (9)0.0007 (8)
N30.0362 (9)0.0287 (9)0.0271 (9)−0.0093 (8)0.0225 (8)−0.0058 (8)
C70.0235 (10)0.0299 (11)0.0242 (10)−0.0055 (9)0.0136 (9)−0.0031 (9)
C20.0236 (10)0.0288 (10)0.0224 (10)−0.0069 (8)0.0145 (8)−0.0039 (8)
C30.0268 (10)0.0314 (11)0.0235 (11)−0.0056 (9)0.0152 (9)−0.0063 (9)
C40.0311 (11)0.0449 (13)0.0316 (12)−0.0006 (10)0.0222 (10)−0.0034 (10)
C200.0301 (10)0.0234 (10)0.0252 (10)−0.0020 (9)0.0188 (9)0.0010 (8)
C250.0328 (11)0.0293 (11)0.0335 (12)0.0028 (9)0.0238 (10)0.0015 (9)
C80.0369 (12)0.0305 (11)0.0309 (12)0.0002 (9)0.0234 (10)−0.0032 (9)
C190.0282 (11)0.0446 (13)0.0317 (12)−0.0083 (10)0.0175 (10)−0.0073 (10)
C150.0283 (11)0.0333 (12)0.0286 (12)−0.0046 (9)0.0148 (9)−0.0051 (9)
C110.0334 (11)0.0262 (10)0.0280 (11)−0.0024 (9)0.0190 (10)0.0007 (9)
C140.0281 (11)0.0310 (11)0.0225 (10)−0.0043 (9)0.0155 (9)−0.0029 (9)
C210.0452 (13)0.0269 (11)0.0485 (14)−0.0009 (10)0.0366 (12)−0.0002 (10)
C100.0408 (13)0.0436 (14)0.0407 (14)0.0086 (11)0.0248 (11)0.0031 (11)
C60.0318 (11)0.0399 (12)0.0285 (12)−0.0044 (10)0.0168 (10)0.0046 (10)
C50.0343 (12)0.0545 (14)0.0312 (12)−0.0054 (11)0.0244 (10)0.0010 (11)
C160.0398 (12)0.0374 (12)0.0375 (13)−0.0019 (10)0.0237 (11)−0.0060 (10)
C240.0296 (11)0.0474 (14)0.0449 (14)−0.0018 (11)0.0236 (11)0.0057 (11)
C120.0345 (13)0.0515 (15)0.0456 (15)0.0038 (11)0.0205 (12)−0.0053 (12)
C230.0496 (14)0.0355 (12)0.0530 (15)−0.0130 (11)0.0357 (13)−0.0007 (11)
C90.0550 (15)0.0369 (13)0.0448 (15)−0.0077 (12)0.0313 (13)−0.0082 (11)
C130.0585 (16)0.0332 (13)0.0658 (18)−0.0030 (12)0.0408 (15)−0.0041 (12)
C170.0500 (14)0.0388 (13)0.0402 (14)−0.0123 (12)0.0260 (12)−0.0155 (11)
C180.0353 (12)0.0523 (15)0.0336 (13)−0.0167 (11)0.0156 (11)−0.0158 (11)
C220.0659 (16)0.0254 (11)0.0565 (16)−0.0099 (11)0.0451 (14)−0.0074 (11)
N1—C11.289 (2)C14—H140.9798
N1—C21.411 (2)C21—C221.521 (3)
N2—C11.379 (2)C21—H21A0.9702
N2—C141.465 (2)C21—H21B0.9699
N2—H20.8602C10—H10A0.9599
C1—N31.370 (2)C10—H10B0.9600
N3—C201.455 (2)C10—H10C0.9601
N3—H30.8599C6—C51.375 (3)
C7—C61.397 (3)C6—H60.9299
C7—C21.406 (3)C5—H50.9301
C7—C111.521 (3)C16—C171.515 (3)
C2—C31.412 (3)C16—H16A0.9700
C3—C41.390 (3)C16—H16B0.9701
C3—C81.518 (3)C24—C231.520 (3)
C4—C51.380 (3)C24—H24A0.9698
C4—H40.9299C24—H24B0.9699
C20—C211.521 (3)C12—H12A0.9598
C20—C251.526 (3)C12—H12B0.9601
C20—H200.9799C12—H12C0.9601
C25—C241.523 (3)C23—C221.525 (3)
C25—H25A0.9700C23—H23A0.9701
C25—H25B0.9701C23—H23B0.9700
C8—C91.522 (3)C9—H9A0.9597
C8—C101.524 (3)C9—H9B0.9602
C8—H80.9798C9—H9C0.9601
C19—C141.519 (3)C13—H13A0.9600
C19—C181.526 (3)C13—H13B0.9601
C19—H19A0.9700C13—H13C0.9600
C19—H19B0.9699C17—C181.515 (3)
C15—C161.521 (3)C17—H17A0.9699
C15—C141.523 (3)C17—H17B0.9701
C15—H15A0.9700C18—H18A0.9700
C15—H15B0.9700C18—H18B0.9702
C11—C121.519 (3)C22—H22A0.9700
C11—C131.520 (3)C22—H22B0.9700
C11—H110.9801
C1—N1—C2120.19 (16)C20—C21—H21B109.4
C1—N2—C14124.63 (16)H21A—C21—H21B108.1
C1—N2—H2117.7C8—C10—H10A109.3
C14—N2—H2117.7C8—C10—H10B109.5
N1—C1—N3119.62 (17)H10A—C10—H10B109.5
N1—C1—N2124.68 (17)C8—C10—H10C109.6
N3—C1—N2115.69 (17)H10A—C10—H10C109.5
C1—N3—C20121.52 (16)H10B—C10—H10C109.5
C1—N3—H3119.3C5—C6—C7121.4 (2)
C20—N3—H3119.2C5—C6—H6119.2
C6—C7—C2118.41 (18)C7—C6—H6119.4
C6—C7—C11120.38 (19)C6—C5—C4119.83 (19)
C2—C7—C11121.19 (17)C6—C5—H5120.1
C7—C2—N1120.96 (17)C4—C5—H5120.0
C7—C2—C3120.35 (17)C17—C16—C15110.58 (18)
N1—C2—C3118.49 (17)C17—C16—H16A109.3
C4—C3—C2118.59 (19)C15—C16—H16A109.4
C4—C3—C8121.83 (18)C17—C16—H16B109.8
C2—C3—C8119.57 (17)C15—C16—H16B109.6
C5—C4—C3121.3 (2)H16A—C16—H16B108.1
C5—C4—H4119.3C23—C24—C25112.42 (18)
C3—C4—H4119.4C23—C24—H24A109.2
N3—C20—C21112.63 (16)C25—C24—H24A109.3
N3—C20—C25109.28 (16)C23—C24—H24B109.0
C21—C20—C25110.17 (16)C25—C24—H24B108.9
N3—C20—H20108.2H24A—C24—H24B107.9
C21—C20—H20108.2C11—C12—H12A109.3
C25—C20—H20108.2C11—C12—H12B109.5
C24—C25—C20110.97 (17)H12A—C12—H12B109.5
C24—C25—H25A109.3C11—C12—H12C109.6
C20—C25—H25A109.4H12A—C12—H12C109.5
C24—C25—H25B109.5H12B—C12—H12C109.5
C20—C25—H25B109.5C24—C23—C22111.05 (18)
H25A—C25—H25B108.1C24—C23—H23A109.5
C3—C8—C9111.11 (18)C22—C23—H23A109.2
C3—C8—C10113.82 (17)C24—C23—H23B109.4
C9—C8—C10110.19 (18)C22—C23—H23B109.6
C3—C8—H8107.2H23A—C23—H23B108.1
C9—C8—H8107.1C8—C9—H9A109.5
C10—C8—H8107.1C8—C9—H9B109.3
C14—C19—C18111.73 (17)H9A—C9—H9B109.5
C14—C19—H19A109.5C8—C9—H9C109.6
C18—C19—H19A109.5H9A—C9—H9C109.5
C14—C19—H19B109.0H9B—C9—H9C109.4
C18—C19—H19B109.1C11—C13—H13A109.7
H19A—C19—H19B107.9C11—C13—H13B109.3
C16—C15—C14111.56 (17)H13A—C13—H13B109.5
C16—C15—H15A109.3C11—C13—H13C109.4
C14—C15—H15A109.3H13A—C13—H13C109.5
C16—C15—H15B109.4H13B—C13—H13C109.5
C14—C15—H15B109.3C16—C17—C18111.0 (2)
H15A—C15—H15B107.9C16—C17—H17A109.6
C12—C11—C13110.6 (2)C18—C17—H17A109.5
C12—C11—C7111.03 (17)C16—C17—H17B109.3
C13—C11—C7112.47 (17)C18—C17—H17B109.4
C12—C11—H11107.5H17A—C17—H17B108.0
C13—C11—H11107.6C17—C18—C19111.79 (19)
C7—C11—H11107.4C17—C18—H18A109.4
N2—C14—C19108.47 (16)C19—C18—H18A109.5
N2—C14—C15112.84 (16)C17—C18—H18B109.0
C19—C14—C15110.73 (17)C19—C18—H18B109.1
N2—C14—H14108.2H18A—C18—H18B107.9
C19—C14—H14108.3C21—C22—C23110.91 (19)
C15—C14—H14108.1C21—C22—H22A109.7
C22—C21—C20110.87 (18)C23—C22—H22A109.6
C22—C21—H21A109.4C21—C22—H22B109.2
C20—C21—H21A109.6C23—C22—H22B109.4
C22—C21—H21B109.4H22A—C22—H22B108.0
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ti-amide catalyzed synthesis of cyclic guanidines from di-/triamines and carbodiimides.

Authors:  Hao Shen; Yang Wang; Zuowei Xie
Journal:  Org Lett       Date:  2011-08-04       Impact factor: 6.005

3.  Synthesis, reactivity, and computational analysis of halophosphines supported by dianionic guanidinate ligands.

Authors:  Allison L Brazeau; Mikko M Hänninen; Heikki M Tuononen; Nathan D Jones; Paul J Ragogna
Journal:  J Am Chem Soc       Date:  2012-03-09       Impact factor: 15.419

4.  Mixed carbene-isocyanide Pd(II) complexes: synthesis, structures and reactivity towards nucleophiles.

Authors:  Yuan Han; Han Vinh Huynh
Journal:  Dalton Trans       Date:  2009-02-05       Impact factor: 4.390

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Crystal structure of 1,2-bis-(2,6-di-methyl-phen-yl)-3-phenyl-guanidine.

Authors:  Hongfei Han; Zhiqiang Guo; Xuehong Wei
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-06-27
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.