Literature DB >> 26279923

Crystal structure of (6-bromo-2-oxo-2H-chromen-4-yl)methyl morpholine-4-carbodi-thio-ate.

K Mahesh Kumar1, K R Roopashree2, M Vinduvahini3, O Kotresh1, H C Devarajegowda2.   

Abstract

In the title compound, C15H14BrNO3S2, the 2H-chromene ring system is nearly planar, with a maximum deviation of 0.034 (2) Å, and the morpholine ring adopts a chair conformation. The dihedral angle between best plane through the 2H-chromene ring system and the morpholine ring is 86.32 (9)°. Intra-molecular C-H⋯S hydrogen bonds are observed. In the crystal, inversion-related C-H⋯S and C-H⋯O inter-actions generate R 2 (2)(10) and R 2 (2)(8) rings patterns, respectively. In addition, the crystal packing features π-π inter-actions between fused benzene rings [centroid-centroid distance = 3.7558 (12) Å].

Entities:  

Keywords:  biological applications; coumarins; crystal structure; di­thio­carbamates; hydrogen bonding; π–π inter­actions

Year:  2015        PMID: 26279923      PMCID: PMC4518962          DOI: 10.1107/S2056989015011007

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological applications of coumarins and di­thio­carbamates, see: D’hooghe & De Kimpe (2006 ▸); Hesse & Kirsch (2002 ▸); Jung et al. (2001 ▸, 2004 ▸); Lee et al. (1998 ▸); Melagraki et al. (2009 ▸); Schönenberger & Lippert (1972 ▸). For standard bond lengths, see: Devarajegowda et al. (2013 ▸). For a related structure and the synthesis of the title compound, see: Devarajegowda et al. (2013 ▸).

Experimental

Crystal data

C15H14BrNO3S2 M = 400.30 Triclinic, a = 7.0500 (3) Å b = 7.6049 (3) Å c = 15.1376 (7) Å α = 78.782 (2)° β = 88.549 (2)° γ = 78.515 (2)° V = 780.07 (6) Å3 Z = 2 Mo Kα radiation μ = 2.91 mm−1 T = 296 K 0.24 × 0.20 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: ψ scan (SADABS; Sheldrick, 2007 ▸) T min = 0.770, T max = 1.000 13789 measured reflections 3224 independent reflections 2806 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.065 S = 1.03 3224 reflections 199 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.43 e Å−3

Data collection: SMART (Bruker, 2001 ▸); cell refinement: SAINT (Bruker, 2001 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL2014. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015011007/bq2399sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015011007/bq2399Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011007/bq2399Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015011007/bq2399fig1.tif The mol­ecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen atoms are shown as spheres of arbitrary radius. Click here for additional data file. . DOI: 10.1107/S2056989015011007/bq2399fig2.tif Crystal packing for the title compound with hydrogen bonds drawn as dashed lines. CCDC reference: 1405247 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H14BrNO3S2F(000) = 404
Mr = 400.30Dx = 1.704 Mg m3
Triclinic, P1Melting point: 435 K
a = 7.0500 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.6049 (3) ÅCell parameters from 3224 reflections
c = 15.1376 (7) Åθ = 2.7–26.5°
α = 78.782 (2)°µ = 2.91 mm1
β = 88.549 (2)°T = 296 K
γ = 78.515 (2)°Plate, colourless
V = 780.07 (6) Å30.24 × 0.20 × 0.12 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3224 independent reflections
Radiation source: fine-focus sealed tube2806 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scansθmax = 26.5°, θmin = 2.7°
Absorption correction: ψ scan (SADABS; Sheldrick, 2007)h = −8→8
Tmin = 0.770, Tmax = 1.000k = −9→9
13789 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0328P)2 + 0.2957P] where P = (Fo2 + 2Fc2)/3
3224 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.19477 (3)0.33461 (3)0.89681 (2)0.05002 (9)
S20.70559 (7)0.58659 (7)0.62666 (3)0.03418 (12)
S31.06683 (7)0.72703 (8)0.56091 (3)0.03905 (13)
O60.5420 (2)0.9077 (2)0.29823 (10)0.0520 (4)
O40.6263 (2)0.94245 (19)0.89038 (9)0.0404 (3)
O50.8534 (3)1.0955 (2)0.84135 (14)0.0650 (5)
N70.7479 (2)0.7625 (2)0.46382 (10)0.0303 (3)
C80.3315 (3)0.5266 (3)0.89259 (13)0.0373 (4)
C90.4939 (3)0.5289 (3)0.84039 (12)0.0337 (4)
H90.53460.43790.80700.040*
C100.5976 (3)0.6687 (2)0.83777 (11)0.0299 (4)
C110.5313 (3)0.8021 (3)0.88881 (12)0.0345 (4)
C120.3686 (3)0.7987 (3)0.94128 (14)0.0441 (5)
H120.32720.88890.97500.053*
C130.2683 (3)0.6601 (3)0.94310 (14)0.0450 (5)
H130.15850.65610.97820.054*
C140.7717 (3)0.6820 (2)0.78610 (11)0.0302 (4)
C150.8595 (3)0.8222 (3)0.78884 (14)0.0381 (4)
H150.97290.82890.75670.046*
C160.7858 (3)0.9630 (3)0.83943 (15)0.0428 (5)
C170.8495 (3)0.5444 (3)0.72867 (12)0.0328 (4)
H17A0.84810.42230.76220.039*
H17B0.98260.55150.71330.039*
C180.8436 (2)0.7021 (2)0.54254 (12)0.0275 (4)
C190.5618 (3)0.7172 (3)0.44561 (14)0.0392 (5)
H19A0.49130.69730.50140.047*
H19B0.58480.60470.42230.047*
C200.4422 (3)0.8674 (3)0.37879 (14)0.0418 (5)
H20A0.32320.83090.36590.050*
H20B0.40810.97640.40470.050*
C210.7118 (3)0.9691 (4)0.31608 (16)0.0503 (6)
H21A0.67531.07990.34030.060*
H21B0.77850.99880.26000.060*
C220.8474 (3)0.8295 (3)0.38134 (13)0.0381 (4)
H22A0.90270.72730.35300.046*
H22B0.95250.88350.39690.046*
U11U22U33U12U13U23
Br10.04201 (14)0.05131 (15)0.05488 (15)−0.01752 (10)−0.00222 (10)0.00309 (10)
S20.0345 (2)0.0421 (3)0.0294 (2)−0.0157 (2)0.00236 (18)−0.00731 (19)
S30.0262 (2)0.0502 (3)0.0414 (3)−0.0118 (2)−0.00145 (19)−0.0059 (2)
O60.0422 (8)0.0743 (11)0.0365 (8)−0.0190 (8)−0.0082 (6)0.0050 (7)
O40.0543 (9)0.0348 (7)0.0348 (7)−0.0096 (6)−0.0005 (6)−0.0120 (6)
O50.0792 (13)0.0475 (10)0.0813 (13)−0.0312 (9)0.0080 (10)−0.0262 (9)
N70.0259 (7)0.0327 (8)0.0322 (8)−0.0083 (6)0.0005 (6)−0.0036 (6)
C80.0350 (10)0.0413 (11)0.0321 (10)−0.0085 (9)−0.0031 (8)0.0025 (8)
C90.0386 (10)0.0339 (10)0.0278 (9)−0.0064 (8)−0.0018 (8)−0.0047 (7)
C100.0356 (9)0.0293 (9)0.0225 (8)−0.0036 (7)−0.0026 (7)−0.0022 (7)
C110.0438 (11)0.0321 (10)0.0260 (9)−0.0038 (8)−0.0029 (8)−0.0052 (7)
C120.0507 (12)0.0463 (12)0.0335 (10)−0.0010 (10)0.0067 (9)−0.0133 (9)
C130.0392 (11)0.0562 (14)0.0358 (11)−0.0049 (10)0.0067 (9)−0.0052 (10)
C140.0330 (9)0.0296 (9)0.0256 (8)−0.0035 (7)−0.0032 (7)−0.0018 (7)
C150.0382 (10)0.0375 (11)0.0395 (10)−0.0099 (8)0.0014 (8)−0.0073 (8)
C160.0522 (13)0.0352 (11)0.0422 (11)−0.0112 (9)−0.0040 (10)−0.0072 (9)
C170.0335 (10)0.0327 (10)0.0304 (9)−0.0033 (8)0.0009 (7)−0.0054 (8)
C180.0269 (9)0.0238 (8)0.0325 (9)−0.0037 (7)0.0026 (7)−0.0089 (7)
C190.0309 (10)0.0447 (12)0.0419 (11)−0.0153 (9)−0.0047 (8)0.0005 (9)
C200.0305 (10)0.0471 (12)0.0449 (11)−0.0067 (9)−0.0030 (8)−0.0022 (9)
C210.0423 (12)0.0611 (15)0.0435 (12)−0.0203 (11)−0.0036 (9)0.0103 (11)
C220.0293 (9)0.0480 (12)0.0356 (10)−0.0085 (9)0.0050 (8)−0.0044 (9)
Br1—C81.894 (2)C12—C131.377 (3)
S2—C181.7839 (18)C12—H120.9300
S2—C171.8095 (19)C13—H130.9300
S3—C181.6585 (18)C14—C151.343 (3)
O6—C201.405 (3)C14—C171.501 (3)
O6—C211.418 (3)C15—C161.442 (3)
O4—C161.365 (3)C15—H150.9300
O4—C111.373 (2)C17—H17A0.9700
O5—C161.202 (3)C17—H17B0.9700
N7—C181.338 (2)C19—C201.500 (3)
N7—C191.466 (2)C19—H19A0.9700
N7—C221.470 (2)C19—H19B0.9700
C8—C91.376 (3)C20—H20A0.9700
C8—C131.385 (3)C20—H20B0.9700
C9—C101.400 (3)C21—C221.501 (3)
C9—H90.9300C21—H21A0.9700
C10—C111.394 (3)C21—H21B0.9700
C10—C141.448 (3)C22—H22A0.9700
C11—C121.380 (3)C22—H22B0.9700
C18—S2—C17104.28 (9)C14—C17—S2110.63 (13)
C20—O6—C21109.57 (16)C14—C17—H17A109.5
C16—O4—C11121.90 (15)S2—C17—H17A109.5
C18—N7—C19123.45 (15)C14—C17—H17B109.5
C18—N7—C22121.02 (15)S2—C17—H17B109.5
C19—N7—C22112.94 (15)H17A—C17—H17B108.1
C9—C8—C13121.3 (2)N7—C18—S3124.57 (14)
C9—C8—Br1119.16 (16)N7—C18—S2112.39 (13)
C13—C8—Br1119.54 (16)S3—C18—S2123.03 (11)
C8—C9—C10119.64 (18)N7—C19—C20111.25 (16)
C8—C9—H9120.2N7—C19—H19A109.4
C10—C9—H9120.2C20—C19—H19A109.4
C11—C10—C9118.19 (18)N7—C19—H19B109.4
C11—C10—C14117.86 (17)C20—C19—H19B109.4
C9—C10—C14123.94 (17)H19A—C19—H19B108.0
O4—C11—C12116.55 (18)O6—C20—C19111.60 (17)
O4—C11—C10121.57 (18)O6—C20—H20A109.3
C12—C11—C10121.87 (19)C19—C20—H20A109.3
C13—C12—C11119.2 (2)O6—C20—H20B109.3
C13—C12—H12120.4C19—C20—H20B109.3
C11—C12—H12120.4H20A—C20—H20B108.0
C12—C13—C8119.8 (2)O6—C21—C22112.72 (18)
C12—C13—H13120.1O6—C21—H21A109.0
C8—C13—H13120.1C22—C21—H21A109.0
C15—C14—C10118.75 (17)O6—C21—H21B109.0
C15—C14—C17120.61 (18)C22—C21—H21B109.0
C10—C14—C17120.62 (16)H21A—C21—H21B107.8
C14—C15—C16122.92 (19)N7—C22—C21111.57 (16)
C14—C15—H15118.5N7—C22—H22A109.3
C16—C15—H15118.5C21—C22—H22A109.3
O5—C16—O4117.3 (2)N7—C22—H22B109.3
O5—C16—C15125.9 (2)C21—C22—H22B109.3
O4—C16—C15116.84 (18)H22A—C22—H22B108.0
C13—C8—C9—C10−0.2 (3)C11—O4—C16—O5176.05 (19)
Br1—C8—C9—C10−179.11 (13)C11—O4—C16—C15−4.6 (3)
C8—C9—C10—C110.0 (3)C14—C15—C16—O5−176.7 (2)
C8—C9—C10—C14179.09 (17)C14—C15—C16—O44.1 (3)
C16—O4—C11—C12−178.20 (18)C15—C14—C17—S2−102.79 (18)
C16—O4—C11—C102.7 (3)C10—C14—C17—S275.62 (18)
C9—C10—C11—O4179.34 (16)C18—S2—C17—C14100.78 (14)
C14—C10—C11—O40.2 (3)C19—N7—C18—S3171.30 (15)
C9—C10—C11—C120.3 (3)C22—N7—C18—S310.9 (3)
C14—C10—C11—C12−178.90 (18)C19—N7—C18—S2−7.7 (2)
O4—C11—C12—C13−179.37 (18)C22—N7—C18—S2−168.15 (14)
C10—C11—C12—C13−0.3 (3)C17—S2—C18—N7−173.01 (13)
C11—C12—C13—C80.0 (3)C17—S2—C18—S37.95 (14)
C9—C8—C13—C120.2 (3)C18—N7—C19—C20150.27 (18)
Br1—C8—C13—C12179.12 (16)C22—N7—C19—C20−47.9 (2)
C11—C10—C14—C15−0.7 (3)C21—O6—C20—C19−61.6 (2)
C9—C10—C14—C15−179.84 (17)N7—C19—C20—O656.1 (2)
C11—C10—C14—C17−179.15 (16)C20—O6—C21—C2259.8 (3)
C9—C10—C14—C171.7 (3)C18—N7—C22—C21−151.82 (19)
C10—C14—C15—C16−1.5 (3)C19—N7—C22—C2145.8 (2)
C17—C14—C15—C16176.98 (18)O6—C21—C22—N7−51.9 (3)
D—H···AD—HH···AD···AD—H···A
C17—H17A···O5i0.972.533.501 (2)176
C17—H17B···S30.972.553.1633 (16)121
C19—H19A···S20.972.372.864 (2)111
C22—H22B···S30.972.613.0486 (19)108
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C17H17AO5i 0.972.533.501(2)176
C17H17BS30.972.553.1633(16)121
C19H19AS20.972.372.864(2)111
C22H22BS30.972.613.0486(19)108

Symmetry code: (i) .

  7 in total

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Authors:  Jae-Chul Jung; Ji-Ho Lee; Seikwan Oh; Jae-Gon Lee; Oee-Sook Park
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2.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  [Antimicrobial and tumor-inhibiting properties of dithiourethane and studies on the mechanism of action. 16. Cytostatica].

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4.  Synthesis and evaluation of the antioxidant and anti-inflammatory activity of novel coumarin-3-aminoamides and their alpha-lipoic acid adducts.

Authors:  Georgia Melagraki; Antreas Afantitis; Olga Igglessi-Markopoulou; Anastasia Detsi; Maria Koufaki; Christos Kontogiorgis; Dimitra J Hadjipavlou-Litina
Journal:  Eur J Med Chem       Date:  2009-01-19       Impact factor: 6.514

5.  (6-Meth-oxy-2-oxo-2H-chromen-4-yl)methyl morpholine-4-carbodithio-ate.

Authors:  H C Devarajegowda; K Mahesh Kumar; S Seenivasa; H K Arunkashi; O Kotresh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-09

6.  Anthelmintic beta-hydroxyketoamides (BKAs).

Authors:  B H Lee; M F Clothier; F E Dutton; G A Conder; S S Johnson
Journal:  Bioorg Med Chem Lett       Date:  1998-12-01       Impact factor: 2.823

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

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