Literature DB >> 26279912

Crystal structure of 3-amino-1-(4-meth-oxy-phen-yl)-1H-benzo[f]chromene-2-carbo-nitrile.

Shaaban K Mohamed1, Peter N Horton2, Mehmet Akkurt3, Sabry H H Younes4, Mustafa R Albayati5.   

Abstract

In the title compound, C21H16N2O2, the meth-oxy-benzene ring is almost perpendicular to the mean plane of the naphthalene ring system, making a dihedral angle of 83.62 (5)°. The 4H-pyran ring fused with the naphthalene ring system is almost planar [maximum deviation = 0.033 (1) Å]. In the crystal, mol-ecules are linked into inversion dimers by pairs of N-H⋯N hydrogen bonds. N-H⋯O hydrogen bonds connect the dimers, forming a helical supra-molecular chain along the a-axis direction. The crystal packing also features C-H⋯π inter-actions.

Entities:  

Keywords:  C—H⋯π inter­actions; benzochromene; chromene compounds; crystal structure; hydrogen bonding

Year:  2015        PMID: 26279912      PMCID: PMC4518947          DOI: 10.1107/S2056989015011020

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological inter­est of benzochromene derivatives, see: Gourdeau et al. (2004 ▸); Sangani et al. (2012 ▸); Cheng et al. (2003 ▸); Kamal et al. (2012 ▸); Denish et al. (2012 ▸); Nitin et al.. (2012 ▸); Bhat et al. (2008 ▸). For a similar structure, see: Akkurt et al. (2013 ▸).

Experimental

Crystal data

C21H16N2O2 M = 328.36 Monoclinic, a = 20.6017 (14) Å b = 6.1461 (4) Å c = 25.9689 (16) Å β = 94.332 (4)° V = 3278.8 (4) Å3 Z = 8 Cu Kα radiation μ = 0.70 mm−1 T = 100 K 0.38 × 0.23 × 0.13 mm

Data collection

Rigaku AFC11 diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▸) T min = 0.910, T max = 1.000 12941 measured reflections 2914 independent reflections 2832 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.03 2914 reflections 236 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.23 e Å−3

Data collection: CrystalClearSM Expert (Rigaku, 2012 ▸); cell refinement: CrystalClearSM Expert; data reduction: CrystalClearSM Expert; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015011020/hg5445sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015011020/hg5445Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011020/hg5445Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015011020/hg5445fig1.tif View of the title compound with the atom numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015011020/hg5445fig2.tif View of the dimers forming by N—H⋯N hydrogen bonds. CCDC reference: 1405398 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H16N2O2F(000) = 1376
Mr = 328.36Dx = 1.330 Mg m3
Monoclinic, I2/aCu Kα radiation, λ = 1.54178 Å
Hall symbol: -I 2yaCell parameters from 15816 reflections
a = 20.6017 (14) Åθ = 2.6–68.3°
b = 6.1461 (4) ŵ = 0.70 mm1
c = 25.9689 (16) ÅT = 100 K
β = 94.332 (4)°Prism, colourless
V = 3278.8 (4) Å30.38 × 0.23 × 0.13 mm
Z = 8
Rigaku AFC11 diffractometer2914 independent reflections
Radiation source: Rotating Anode2832 reflections with I > 2σ(I)
Detector resolution: 22.2222 pixels mm-1Rint = 0.037
profile data from ω–scansθmax = 68.2°, θmin = 3.4°
Absorption correction: multi-scan (CrystalClearSM Expert; Rigaku, 2012)h = −24→24
Tmin = 0.910, Tmax = 1.000k = −5→7
12941 measured reflectionsl = −31→24
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.041w = 1/[σ2(Fo2) + (0.0752P)2 + 2.3851P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.116(Δ/σ)max = 0.001
S = 1.03Δρmax = 0.31 e Å3
2914 reflectionsΔρmin = −0.23 e Å3
236 parametersExtinction correction: SHELXL2014 (Sheldrick, 2015), FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
0 restraintsExtinction coefficient: 0.0014 (2)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.46524 (4)1.06769 (14)0.61312 (3)0.0180 (2)
O20.82346 (4)0.82919 (15)0.54600 (3)0.0243 (3)
N10.43089 (5)0.85280 (19)0.54736 (4)0.0229 (3)
N20.54448 (5)0.39845 (17)0.54907 (4)0.0212 (3)
C10.47727 (6)0.88455 (19)0.58585 (5)0.0171 (3)
C20.52947 (6)0.75466 (19)0.59874 (5)0.0172 (3)
C30.58264 (6)0.80882 (19)0.64036 (4)0.0166 (3)
C40.56459 (6)1.01315 (19)0.66861 (4)0.0166 (3)
C50.60414 (6)1.0884 (2)0.71278 (5)0.0184 (3)
C60.65975 (6)0.9729 (2)0.73361 (5)0.0233 (4)
C70.69636 (7)1.0479 (3)0.77625 (5)0.0303 (4)
C80.68002 (7)1.2444 (3)0.80039 (5)0.0301 (4)
C90.62635 (6)1.3586 (2)0.78173 (5)0.0245 (4)
C100.58687 (6)1.2843 (2)0.73818 (5)0.0190 (3)
C110.52962 (6)1.39706 (19)0.71978 (5)0.0189 (3)
C120.49085 (6)1.3200 (2)0.67886 (5)0.0181 (3)
C130.50912 (6)1.12794 (19)0.65376 (4)0.0164 (3)
C140.53658 (5)0.5592 (2)0.57068 (4)0.0170 (3)
C150.64862 (5)0.8191 (2)0.61700 (4)0.0162 (3)
C160.68716 (6)0.6343 (2)0.61775 (5)0.0192 (3)
C170.74603 (6)0.6302 (2)0.59448 (5)0.0204 (3)
C180.76660 (6)0.8158 (2)0.57027 (5)0.0189 (3)
C190.72851 (6)1.0035 (2)0.56930 (5)0.0198 (3)
C200.66979 (6)1.0046 (2)0.59208 (4)0.0180 (3)
C210.85852 (6)0.6305 (2)0.53986 (6)0.0306 (4)
H1A0.4404 (8)0.772 (3)0.5202 (7)0.031 (4)*
H1B0.3976 (8)0.948 (3)0.5451 (6)0.028 (4)*
H30.584700.686800.665900.0200*
H60.671800.841300.717700.0280*
H70.733100.966800.789700.0360*
H80.706201.296900.829400.0360*
H90.615301.490000.798200.0290*
H110.518101.528200.736200.0230*
H120.452001.394600.667400.0220*
H160.673200.507200.634500.0230*
H170.771700.501600.595200.0250*
H190.742901.131200.552900.0240*
H200.643801.132400.590700.0220*
H21A0.830400.525700.520500.0460*
H21B0.872100.570300.573900.0460*
H21C0.897000.659700.521000.0460*
U11U22U33U12U13U23
O10.0168 (4)0.0180 (4)0.0191 (4)0.0025 (3)0.0012 (3)−0.0031 (3)
O20.0162 (4)0.0278 (5)0.0297 (5)−0.0001 (4)0.0079 (4)−0.0048 (4)
N10.0184 (5)0.0256 (6)0.0243 (6)0.0045 (4)−0.0010 (4)−0.0081 (5)
N20.0229 (5)0.0203 (6)0.0204 (5)0.0018 (4)0.0015 (4)−0.0013 (4)
C10.0171 (6)0.0171 (6)0.0176 (6)−0.0016 (4)0.0052 (4)−0.0018 (4)
C20.0169 (6)0.0171 (6)0.0179 (6)−0.0010 (5)0.0039 (4)−0.0010 (5)
C30.0166 (6)0.0169 (6)0.0163 (6)−0.0003 (4)0.0023 (4)0.0006 (5)
C40.0167 (6)0.0177 (6)0.0159 (6)−0.0012 (5)0.0055 (4)0.0013 (5)
C50.0188 (6)0.0204 (6)0.0165 (6)−0.0013 (5)0.0049 (5)0.0009 (5)
C60.0238 (6)0.0262 (7)0.0199 (6)0.0044 (5)0.0010 (5)−0.0027 (5)
C70.0255 (7)0.0398 (8)0.0248 (7)0.0073 (6)−0.0039 (5)−0.0037 (6)
C80.0283 (7)0.0398 (8)0.0213 (6)−0.0005 (6)−0.0041 (5)−0.0086 (6)
C90.0268 (7)0.0261 (7)0.0210 (6)−0.0020 (5)0.0045 (5)−0.0057 (5)
C100.0209 (6)0.0199 (6)0.0170 (6)−0.0026 (5)0.0063 (5)−0.0003 (5)
C110.0231 (6)0.0164 (6)0.0180 (6)−0.0017 (5)0.0078 (5)−0.0003 (5)
C120.0183 (6)0.0179 (6)0.0188 (6)0.0010 (5)0.0062 (5)0.0025 (5)
C130.0170 (6)0.0183 (6)0.0143 (5)−0.0022 (4)0.0038 (4)0.0015 (4)
C140.0156 (6)0.0197 (6)0.0160 (6)−0.0003 (4)0.0024 (4)0.0019 (5)
C150.0149 (6)0.0189 (6)0.0146 (5)−0.0004 (4)−0.0001 (4)−0.0024 (4)
C160.0199 (6)0.0165 (6)0.0213 (6)0.0000 (5)0.0015 (5)0.0007 (5)
C170.0178 (6)0.0194 (6)0.0240 (6)0.0046 (5)0.0008 (5)−0.0031 (5)
C180.0139 (5)0.0257 (6)0.0172 (6)−0.0013 (5)0.0019 (4)−0.0053 (5)
C190.0213 (6)0.0181 (6)0.0203 (6)−0.0025 (5)0.0031 (5)0.0001 (5)
C200.0185 (6)0.0163 (6)0.0192 (6)0.0022 (4)0.0016 (4)−0.0016 (5)
C210.0197 (6)0.0321 (8)0.0410 (8)0.0025 (5)0.0089 (6)−0.0137 (6)
O1—C11.3625 (15)C11—C121.3650 (18)
O1—C131.3871 (14)C12—C131.4132 (17)
O2—C181.3740 (15)C15—C201.3970 (17)
O2—C211.4338 (15)C15—C161.3851 (17)
N1—C11.3438 (16)C16—C171.3955 (18)
N2—C141.1538 (16)C17—C181.3843 (18)
C1—C21.3607 (17)C18—C191.3944 (17)
N1—H1B0.900 (17)C19—C201.3862 (17)
N1—H1A0.896 (18)C3—H31.0000
C2—C141.4184 (17)C6—H60.9500
C2—C31.5166 (17)C7—H70.9500
C3—C41.5149 (16)C8—H80.9500
C3—C151.5311 (16)C9—H90.9500
C4—C131.3733 (17)C11—H110.9500
C4—C51.4326 (17)C12—H120.9500
C5—C101.4307 (18)C16—H160.9500
C5—C61.4197 (18)C17—H170.9500
C6—C71.3716 (19)C19—H190.9500
C7—C81.413 (2)C20—H200.9500
C8—C91.367 (2)C21—H21A0.9800
C9—C101.4178 (18)C21—H21B0.9800
C10—C111.4194 (18)C21—H21C0.9800
C1—O1—C13118.84 (9)C15—C16—C17121.65 (11)
C18—O2—C21117.01 (10)C16—C17—C18119.19 (11)
O1—C1—N1111.07 (10)O2—C18—C19116.12 (11)
O1—C1—C2121.89 (11)O2—C18—C17123.96 (11)
N1—C1—C2127.02 (12)C17—C18—C19119.92 (12)
H1A—N1—H1B121.3 (15)C18—C19—C20120.29 (11)
C1—N1—H1A118.7 (11)C15—C20—C19120.45 (11)
C1—N1—H1B116.7 (11)C2—C3—H3107.00
C1—C2—C3124.15 (11)C4—C3—H3107.00
C1—C2—C14118.75 (11)C15—C3—H3107.00
C3—C2—C14117.06 (10)C5—C6—H6119.00
C2—C3—C4109.67 (10)C7—C6—H6119.00
C4—C3—C15114.55 (10)C6—C7—H7120.00
C2—C3—C15109.98 (9)C8—C7—H7120.00
C5—C4—C13118.03 (10)C7—C8—H8120.00
C3—C4—C5120.65 (10)C9—C8—H8120.00
C3—C4—C13121.29 (10)C8—C9—H9119.00
C4—C5—C6122.51 (11)C10—C9—H9119.00
C4—C5—C10119.65 (11)C10—C11—H11119.00
C6—C5—C10117.83 (11)C12—C11—H11119.00
C5—C6—C7121.22 (12)C11—C12—H12120.00
C6—C7—C8120.70 (13)C13—C12—H12120.00
C7—C8—C9119.67 (13)C15—C16—H16119.00
C8—C9—C10121.15 (12)C17—C16—H16119.00
C5—C10—C9119.42 (11)C16—C17—H17120.00
C5—C10—C11119.01 (11)C18—C17—H17120.00
C9—C10—C11121.56 (11)C18—C19—H19120.00
C10—C11—C12121.01 (11)C20—C19—H19120.00
C11—C12—C13119.23 (11)C15—C20—H20120.00
C4—C13—C12123.00 (11)C19—C20—H20120.00
O1—C13—C12113.14 (10)O2—C21—H21A109.00
O1—C13—C4123.86 (10)O2—C21—H21B109.00
N2—C14—C2177.37 (12)O2—C21—H21C109.00
C3—C15—C16119.06 (10)H21A—C21—H21B109.00
C3—C15—C20122.33 (10)H21A—C21—H21C109.00
C16—C15—C20118.49 (10)H21B—C21—H21C109.00
C13—O1—C1—N1−178.67 (10)C5—C4—C13—O1−177.22 (10)
C13—O1—C1—C22.86 (17)C5—C4—C13—C122.37 (18)
C1—O1—C13—C4−0.19 (16)C4—C5—C6—C7−179.38 (13)
C1—O1—C13—C12−179.81 (10)C10—C5—C6—C7−0.91 (19)
C21—O2—C18—C178.50 (17)C4—C5—C10—C9−179.71 (11)
C21—O2—C18—C19−171.07 (11)C4—C5—C10—C111.72 (18)
O1—C1—C2—C3−6.34 (19)C6—C5—C10—C91.78 (18)
O1—C1—C2—C14175.95 (11)C6—C5—C10—C11−176.80 (12)
N1—C1—C2—C3175.45 (12)C5—C6—C7—C8−0.7 (2)
N1—C1—C2—C14−2.3 (2)C6—C7—C8—C91.4 (2)
C1—C2—C3—C46.28 (16)C7—C8—C9—C10−0.5 (2)
C1—C2—C3—C15−120.55 (13)C8—C9—C10—C5−1.10 (19)
C14—C2—C3—C4−175.97 (10)C8—C9—C10—C11177.44 (13)
C14—C2—C3—C1557.20 (14)C5—C10—C11—C120.73 (19)
C2—C3—C4—C5174.52 (11)C9—C10—C11—C12−177.82 (12)
C2—C3—C4—C13−3.53 (15)C10—C11—C12—C13−1.63 (19)
C15—C3—C4—C5−61.27 (14)C11—C12—C13—O1179.67 (11)
C15—C3—C4—C13120.68 (12)C11—C12—C13—C40.03 (19)
C2—C3—C15—C16−93.24 (12)C3—C15—C16—C17176.32 (11)
C2—C3—C15—C2082.78 (13)C20—C15—C16—C170.14 (18)
C4—C3—C15—C16142.72 (11)C3—C15—C20—C19−176.89 (10)
C4—C3—C15—C20−41.26 (14)C16—C15—C20—C19−0.85 (17)
C3—C4—C5—C6−2.87 (18)C15—C16—C17—C180.34 (19)
C3—C4—C5—C10178.69 (11)C16—C17—C18—O2−179.67 (11)
C13—C4—C5—C6175.25 (12)C16—C17—C18—C19−0.12 (19)
C13—C4—C5—C10−3.20 (17)O2—C18—C19—C20179.00 (11)
C3—C4—C13—O10.88 (17)C17—C18—C19—C20−0.59 (19)
C3—C4—C13—C12−179.53 (11)C18—C19—C20—C151.08 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.896 (18)2.125 (18)3.0174 (15)173.8 (16)
N1—H1B···O2ii0.900 (17)2.053 (17)2.9509 (14)175.5 (14)
C11—H11···Cg2iii0.952.563.3913 (14)147
Table 1

Hydrogen-bond geometry (, )

Cg2 is the centroid of the C4/C5/C10C13 ring.

DHA DHHA D A DHA
N1H1AN2i 0.896(18)2.125(18)3.0174(15)173.8(16)
N1H1BO2ii 0.900(17)2.053(17)2.9509(14)175.5(14)
C11H11Cg2iii 0.952.563.3913(14)147

Symmetry codes: (i) ; (ii) ; (iii) .

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