| Literature DB >> 26279870 |
H Purandara1, Sabine Foro2, B Thimme Gowda3.
Abstract
The title compound, C17H16ClN3O2·H2O, an acyl-hydrazone derivative, contains a glycine moiety and two substituted benzene rings on either end of the chain. It crystallized as a monohydrate. The mol-ecules adopt an E conformation with respect to the C=N double bond, as indicated by the N-N=C-C torsion angle of 179.38 (14)°. The mol-ecule is twisted in such a way that the almost planar Car-C(=O)-N(H)-C(H2) and C(H2)-C(=O)N(H)-N=C-Car [r.m.s deviations = 0.009 and 0.025 Å, respectively] segments are inclined to on another by 77.36 (8)°, while the benzene rings are normal to one another, making a dihedral angle of 89.69 (9)°. In the crystal, the water mol-ecule links three mol-ecules through two O-H⋯O and one N-H⋯O hydrogen bonds. The mol-ecules are linked via pairs of N-H⋯O hydrogen bonds, forming inversion dimers with an R 2 (2)(14) ring motif. The dimers are linked by O-H⋯O hydrogen bonds, involving two mol-ecules of water, forming chains along [100], enclosing R 2 (2)(14) and R 2 (2)(18) ring motifs. The chains are linked through C-H⋯O inter-actions, forming sheets parallel to (010). Within the sheets, there are C-H⋯π and parallel slipped π-π stacking inter-actions present [inter-centroid distance = 3.6458 (12) Å].Entities:
Keywords: crystal structure; glycinyl hydrazone; hydrogen bonding; monohydrate
Year: 2015 PMID: 26279870 PMCID: PMC4518978 DOI: 10.1107/S2056989015011147
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (, )
Cg1 is the centroid of the toluene ring C1C6.
|
|
| H |
|
|
|---|---|---|---|---|
| O3H31O1 | 0.84(2) | 2.13(2) | 2.897(2) | 152(3) |
| O3H32O2i | 0.86(2) | 1.92(2) | 2.772(2) | 174(3) |
| N1H1 | 0.84(2) | 2.15(2) | 2.941(2) | 158(2) |
| N2H2 | 0.87(2) | 2.09(2) | 2.944(2) | 165(2) |
| C14H14O2iii | 0.93 | 2.57 | 3.404(2) | 150 |
| C15H15 | 0.93 | 2.89 | 3.793(2) | 165 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Hydrogen-bonding pattern in the title compound (see Table 1 ▸ for details). [Symmetry codes: (a) −x + 1, −y + 1, −z; (d) x + 1, y, z; (e) x, y, z + 1.]
Figure 3A view along the a axis of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines and C—H⋯π interactions are represented as red arrows (see Table 1 ▸ for further details).
Experimental details
| Crystal data | |
| Chemical formula | C17H16ClN3O2H2O |
|
| 347.79 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 293 |
|
| 6.9729(7), 10.642(1), 11.879(1) |
| , , () | 95.049(8), 100.324(9), 102.870(9) |
|
| 837.88(14) |
|
| 2 |
| Radiation type | Mo |
| (mm1) | 0.25 |
| Crystal size (mm) | 0.50 0.40 0.32 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur with Sapphire CCD detector |
| Absorption correction | Multi-scan ( |
|
| 0.886, 0.925 |
| No. of measured, independent and observed [ | 5538, 3393, 2829 |
|
| 0.009 |
| (sin /)max (1) | 0.625 |
| Refinement | |
|
| 0.039, 0.103, 1.04 |
| No. of reflections | 3393 |
| No. of parameters | 230 |
| No. of restraints | 4 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.24, 0.33 |
Computer programs: CrysAlis CCD and CrysAlis RED (Oxford Diffraction, 2009 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸).
| C17H16ClN3O2·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3287 reflections | |
| θ = 3.1–27.7° | |
| µ = 0.25 mm−1 | |
| α = 95.049 (8)° | |
| β = 100.324 (9)° | Prism, colourless |
| γ = 102.870 (9)° | 0.50 × 0.40 × 0.32 mm |
| Oxford Diffraction Xcalibur single crystal X-ray diffractometer with a Sapphire CCD detector | 3393 independent reflections |
| Radiation source: fine-focus sealed tube | 2829 reflections with |
| Graphite monochromator | |
| Rotation method data acquisition using ω scans | θmax = 26.4°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 5538 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3393 reflections | (Δ/σ)max < 0.001 |
| 230 parameters | Δρmax = 0.24 e Å−3 |
| 4 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.60321 (11) | 0.19118 (5) | 0.47068 (5) | 0.0724 (2) | |
| O1 | 0.62994 (17) | 0.78208 (12) | −0.04768 (11) | 0.0451 (3) | |
| O2 | 0.7257 (2) | 0.49520 (12) | −0.03656 (10) | 0.0499 (3) | |
| N1 | 0.9290 (2) | 0.75016 (14) | 0.03466 (12) | 0.0417 (3) | |
| H1N | 1.054 (2) | 0.766 (2) | 0.0404 (17) | 0.050* | |
| N2 | 0.6958 (2) | 0.45136 (14) | 0.14178 (11) | 0.0395 (3) | |
| H2N | 0.617 (3) | 0.3748 (16) | 0.1142 (16) | 0.047* | |
| N3 | 0.7330 (2) | 0.49621 (14) | 0.25783 (11) | 0.0365 (3) | |
| C1 | 0.9132 (2) | 0.87432 (15) | −0.12558 (13) | 0.0340 (3) | |
| C2 | 0.8034 (3) | 0.93929 (18) | −0.19759 (16) | 0.0470 (4) | |
| H2 | 0.6703 | 0.9352 | −0.1934 | 0.056* | |
| C3 | 0.8883 (3) | 1.0105 (2) | −0.27602 (17) | 0.0543 (5) | |
| H3 | 0.8112 | 1.0537 | −0.3235 | 0.065* | |
| C4 | 1.0838 (3) | 1.01864 (17) | −0.28502 (15) | 0.0471 (4) | |
| C5 | 1.1929 (3) | 0.9537 (2) | −0.21334 (17) | 0.0551 (5) | |
| H5 | 1.3259 | 0.9581 | −0.2179 | 0.066* | |
| C6 | 1.1104 (3) | 0.8822 (2) | −0.13474 (17) | 0.0503 (5) | |
| H6 | 1.1879 | 0.8390 | −0.0876 | 0.060* | |
| C7 | 0.8130 (2) | 0.79820 (15) | −0.04311 (13) | 0.0349 (3) | |
| C8 | 0.8517 (3) | 0.67330 (17) | 0.11810 (14) | 0.0418 (4) | |
| H8A | 0.7536 | 0.7113 | 0.1479 | 0.050* | |
| H8B | 0.9608 | 0.6755 | 0.1822 | 0.050* | |
| C9 | 0.7542 (2) | 0.53317 (16) | 0.06684 (13) | 0.0365 (4) | |
| C10 | 0.6807 (2) | 0.41135 (17) | 0.32262 (14) | 0.0383 (4) | |
| H10 | 0.6205 | 0.3256 | 0.2906 | 0.046* | |
| C11 | 0.7154 (2) | 0.44844 (17) | 0.44785 (13) | 0.0365 (4) | |
| C12 | 0.6834 (3) | 0.35608 (18) | 0.52341 (15) | 0.0426 (4) | |
| C13 | 0.7134 (3) | 0.3916 (2) | 0.64139 (15) | 0.0517 (5) | |
| H13 | 0.6894 | 0.3284 | 0.6899 | 0.062* | |
| C14 | 0.7787 (3) | 0.5207 (2) | 0.68642 (16) | 0.0558 (5) | |
| H14 | 0.7984 | 0.5451 | 0.7656 | 0.067* | |
| C15 | 0.8151 (3) | 0.6143 (2) | 0.61429 (16) | 0.0539 (5) | |
| H15 | 0.8613 | 0.7016 | 0.6448 | 0.065* | |
| C16 | 0.7828 (3) | 0.57766 (19) | 0.49659 (15) | 0.0453 (4) | |
| H16 | 0.8069 | 0.6415 | 0.4487 | 0.054* | |
| C17 | 1.1791 (4) | 1.0976 (2) | −0.36898 (19) | 0.0688 (6) | |
| H17A | 1.0858 | 1.1420 | −0.4073 | 0.103* | |
| H17B | 1.2140 | 1.0409 | −0.4252 | 0.103* | |
| H17C | 1.2981 | 1.1602 | −0.3279 | 0.103* | |
| O3 | 0.3605 (2) | 0.76894 (15) | 0.11275 (13) | 0.0555 (4) | |
| H31 | 0.452 (3) | 0.799 (3) | 0.078 (2) | 0.083* | |
| H32 | 0.340 (4) | 0.6869 (17) | 0.094 (2) | 0.083* |
| Cl1 | 0.1083 (5) | 0.0530 (3) | 0.0572 (3) | 0.0101 (3) | 0.0233 (3) | 0.0258 (2) |
| O1 | 0.0388 (6) | 0.0496 (7) | 0.0445 (7) | 0.0007 (5) | 0.0129 (5) | 0.0100 (5) |
| O2 | 0.0698 (9) | 0.0503 (7) | 0.0277 (6) | 0.0064 (6) | 0.0134 (6) | 0.0093 (5) |
| N1 | 0.0383 (7) | 0.0470 (8) | 0.0364 (7) | −0.0009 (6) | 0.0082 (6) | 0.0159 (6) |
| N2 | 0.0474 (8) | 0.0396 (8) | 0.0278 (7) | 0.0010 (6) | 0.0081 (6) | 0.0094 (6) |
| N3 | 0.0372 (7) | 0.0458 (8) | 0.0270 (6) | 0.0077 (6) | 0.0077 (5) | 0.0115 (6) |
| C1 | 0.0395 (8) | 0.0314 (8) | 0.0285 (7) | 0.0016 (6) | 0.0088 (6) | 0.0038 (6) |
| C2 | 0.0442 (10) | 0.0510 (10) | 0.0485 (10) | 0.0116 (8) | 0.0115 (8) | 0.0165 (8) |
| C3 | 0.0641 (12) | 0.0526 (11) | 0.0495 (11) | 0.0152 (9) | 0.0112 (9) | 0.0241 (9) |
| C4 | 0.0656 (12) | 0.0367 (9) | 0.0349 (9) | −0.0020 (8) | 0.0169 (8) | 0.0061 (7) |
| C5 | 0.0463 (10) | 0.0709 (13) | 0.0527 (11) | 0.0093 (9) | 0.0227 (9) | 0.0204 (10) |
| C6 | 0.0454 (10) | 0.0651 (12) | 0.0476 (10) | 0.0167 (9) | 0.0155 (8) | 0.0250 (9) |
| C7 | 0.0384 (8) | 0.0322 (8) | 0.0303 (8) | −0.0005 (6) | 0.0090 (6) | 0.0028 (6) |
| C8 | 0.0467 (9) | 0.0454 (9) | 0.0290 (8) | 0.0003 (7) | 0.0072 (7) | 0.0117 (7) |
| C9 | 0.0379 (8) | 0.0433 (9) | 0.0288 (8) | 0.0075 (7) | 0.0077 (6) | 0.0115 (7) |
| C10 | 0.0424 (9) | 0.0427 (9) | 0.0322 (8) | 0.0093 (7) | 0.0112 (7) | 0.0126 (7) |
| C11 | 0.0328 (8) | 0.0508 (10) | 0.0308 (8) | 0.0137 (7) | 0.0102 (6) | 0.0153 (7) |
| C12 | 0.0396 (9) | 0.0558 (10) | 0.0377 (9) | 0.0141 (8) | 0.0123 (7) | 0.0196 (8) |
| C13 | 0.0470 (10) | 0.0817 (15) | 0.0340 (9) | 0.0208 (10) | 0.0120 (8) | 0.0276 (9) |
| C14 | 0.0490 (11) | 0.0920 (16) | 0.0288 (9) | 0.0226 (10) | 0.0071 (8) | 0.0091 (9) |
| C15 | 0.0540 (11) | 0.0652 (13) | 0.0408 (10) | 0.0157 (9) | 0.0067 (8) | 0.0015 (9) |
| C16 | 0.0478 (10) | 0.0527 (11) | 0.0382 (9) | 0.0135 (8) | 0.0112 (7) | 0.0140 (8) |
| C17 | 0.0966 (17) | 0.0565 (12) | 0.0513 (12) | −0.0029 (12) | 0.0318 (12) | 0.0176 (10) |
| O3 | 0.0576 (8) | 0.0586 (8) | 0.0554 (8) | 0.0145 (7) | 0.0223 (7) | 0.0109 (7) |
| Cl1—C12 | 1.740 (2) | C6—H6 | 0.9300 |
| O1—C7 | 1.240 (2) | C8—C9 | 1.516 (2) |
| O2—C9 | 1.2251 (19) | C8—H8A | 0.9700 |
| N1—C7 | 1.330 (2) | C8—H8B | 0.9700 |
| N1—C8 | 1.442 (2) | C10—C11 | 1.467 (2) |
| N1—H1N | 0.842 (15) | C10—H10 | 0.9300 |
| N2—C9 | 1.351 (2) | C11—C16 | 1.386 (3) |
| N2—N3 | 1.3771 (18) | C11—C12 | 1.397 (2) |
| N2—H2N | 0.873 (15) | C12—C13 | 1.385 (3) |
| N3—C10 | 1.271 (2) | C13—C14 | 1.373 (3) |
| C1—C2 | 1.379 (2) | C13—H13 | 0.9300 |
| C1—C6 | 1.383 (2) | C14—C15 | 1.381 (3) |
| C1—C7 | 1.496 (2) | C14—H14 | 0.9300 |
| C2—C3 | 1.384 (3) | C15—C16 | 1.382 (3) |
| C2—H2 | 0.9300 | C15—H15 | 0.9300 |
| C3—C4 | 1.371 (3) | C16—H16 | 0.9300 |
| C3—H3 | 0.9300 | C17—H17A | 0.9600 |
| C4—C5 | 1.373 (3) | C17—H17B | 0.9600 |
| C4—C17 | 1.510 (2) | C17—H17C | 0.9600 |
| C5—C6 | 1.380 (2) | O3—H31 | 0.840 (17) |
| C5—H5 | 0.9300 | O3—H32 | 0.856 (17) |
| C7—N1—C8 | 122.85 (15) | H8A—C8—H8B | 107.9 |
| C7—N1—H1N | 121.7 (14) | O2—C9—N2 | 121.16 (16) |
| C8—N1—H1N | 115.4 (14) | O2—C9—C8 | 122.74 (14) |
| C9—N2—N3 | 119.90 (14) | N2—C9—C8 | 116.08 (14) |
| C9—N2—H2N | 118.6 (13) | N3—C10—C11 | 120.13 (16) |
| N3—N2—H2N | 120.7 (13) | N3—C10—H10 | 119.9 |
| C10—N3—N2 | 115.65 (14) | C11—C10—H10 | 119.9 |
| C2—C1—C6 | 117.83 (15) | C16—C11—C12 | 116.92 (16) |
| C2—C1—C7 | 118.58 (15) | C16—C11—C10 | 121.14 (15) |
| C6—C1—C7 | 123.59 (15) | C12—C11—C10 | 121.94 (16) |
| C1—C2—C3 | 121.00 (17) | C13—C12—C11 | 121.76 (18) |
| C1—C2—H2 | 119.5 | C13—C12—Cl1 | 117.92 (14) |
| C3—C2—H2 | 119.5 | C11—C12—Cl1 | 120.32 (14) |
| C4—C3—C2 | 121.22 (18) | C14—C13—C12 | 119.63 (17) |
| C4—C3—H3 | 119.4 | C14—C13—H13 | 120.2 |
| C2—C3—H3 | 119.4 | C12—C13—H13 | 120.2 |
| C3—C4—C5 | 117.71 (16) | C13—C14—C15 | 120.05 (17) |
| C3—C4—C17 | 121.75 (19) | C13—C14—H14 | 120.0 |
| C5—C4—C17 | 120.53 (19) | C15—C14—H14 | 120.0 |
| C4—C5—C6 | 121.76 (18) | C14—C15—C16 | 119.8 (2) |
| C4—C5—H5 | 119.1 | C14—C15—H15 | 120.1 |
| C6—C5—H5 | 119.1 | C16—C15—H15 | 120.1 |
| C5—C6—C1 | 120.49 (17) | C15—C16—C11 | 121.87 (17) |
| C5—C6—H6 | 119.8 | C15—C16—H16 | 119.1 |
| C1—C6—H6 | 119.8 | C11—C16—H16 | 119.1 |
| O1—C7—N1 | 122.19 (14) | C4—C17—H17A | 109.5 |
| O1—C7—C1 | 120.78 (15) | C4—C17—H17B | 109.5 |
| N1—C7—C1 | 117.03 (14) | H17A—C17—H17B | 109.5 |
| N1—C8—C9 | 112.26 (14) | C4—C17—H17C | 109.5 |
| N1—C8—H8A | 109.2 | H17A—C17—H17C | 109.5 |
| C9—C8—H8A | 109.2 | H17B—C17—H17C | 109.5 |
| N1—C8—H8B | 109.2 | H31—O3—H32 | 102 (3) |
| C9—C8—H8B | 109.2 | ||
| C9—N2—N3—C10 | −177.07 (15) | N3—N2—C9—O2 | 178.83 (15) |
| C6—C1—C2—C3 | −0.3 (3) | N3—N2—C9—C8 | −2.4 (2) |
| C7—C1—C2—C3 | −179.62 (17) | N1—C8—C9—O2 | −7.6 (2) |
| C1—C2—C3—C4 | 0.2 (3) | N1—C8—C9—N2 | 173.58 (15) |
| C2—C3—C4—C5 | −0.1 (3) | N2—N3—C10—C11 | 179.38 (14) |
| C2—C3—C4—C17 | −179.09 (19) | N3—C10—C11—C16 | 7.7 (2) |
| C3—C4—C5—C6 | 0.1 (3) | N3—C10—C11—C12 | −171.98 (16) |
| C17—C4—C5—C6 | 179.14 (19) | C16—C11—C12—C13 | 1.3 (2) |
| C4—C5—C6—C1 | −0.3 (3) | C10—C11—C12—C13 | −179.00 (16) |
| C2—C1—C6—C5 | 0.3 (3) | C16—C11—C12—Cl1 | −178.83 (13) |
| C7—C1—C6—C5 | 179.62 (17) | C10—C11—C12—Cl1 | 0.9 (2) |
| C8—N1—C7—O1 | 1.4 (3) | C11—C12—C13—C14 | −0.8 (3) |
| C8—N1—C7—C1 | −179.01 (15) | Cl1—C12—C13—C14 | 179.30 (15) |
| C2—C1—C7—O1 | 7.7 (2) | C12—C13—C14—C15 | −0.3 (3) |
| C6—C1—C7—O1 | −171.59 (17) | C13—C14—C15—C16 | 0.9 (3) |
| C2—C1—C7—N1 | −171.90 (16) | C14—C15—C16—C11 | −0.4 (3) |
| C6—C1—C7—N1 | 8.8 (2) | C12—C11—C16—C15 | −0.7 (3) |
| C7—N1—C8—C9 | 79.8 (2) | C10—C11—C16—C15 | 179.63 (17) |
| H··· | ||||
| O3—H31···O1 | 0.84 (2) | 2.13 (2) | 2.897 (2) | 152 (3) |
| O3—H32···O2i | 0.86 (2) | 1.92 (2) | 2.772 (2) | 174 (3) |
| N1—H1 | 0.84 (2) | 2.15 (2) | 2.941 (2) | 158 (2) |
| N2—H2 | 0.87 (2) | 2.09 (2) | 2.944 (2) | 165 (2) |
| C14—H14···O2iii | 0.93 | 2.57 | 3.404 (2) | 150 |
| C15—H15··· | 0.93 | 2.89 | 3.793 (2) | 165 |