Literature DB >> 26279863

Crystal structures of two 6-(2-hy-droxy-benzo-yl)-5H-thia-zolo[3,2-a]pyrimidin-5-ones.

Ligia R Gomes1, John Nicolson Low2, Fernando Cagide3, Fernanda Borges3.   

Abstract

The title compounds, 6-(2-hy-droxy-benz-yl)-5H-thia-zolo[3,2-a]pyrimidin-5-one, C13H8N2O3S, (1), and 6-(2-hy-droxy-benz-yl)-3-methyl-5H-thia-zolo[3,2-a]pyrimidin-5-one, C14H10N2O3S, (2), were synthesized when a chromone-3-carb-oxy-lic acid, activated with (benzotriazol-1-yl-oxy)tripyrrolidinyl-phospho-nium hexa-fluorido-phosphate (PyBOP), was reacted with a primary heteromamine. Instead of the expected amidation, the unusual title thia-zolo-pyrimidine-5-one derivatives were obtained serendipitously and a mechanism of formation is proposed. Both compounds present an intra-molecular O-H⋯O hydrogen bond, which generates an S(6) ring. The dihedral angles between the heterocyclic moiety and the 2-hydroxybenzoyl ring are 55.22 (5) and 46.83 (6)° for (1) and (2), respectively. In the crystals, the mol-ecules are linked by weak C-H⋯O hydrogen bonds and π-π stacking inter-actions.

Entities:  

Keywords:  conformation; crystal structure; hydrogen bonding; supra­molecular structure; thia­zole; π–π stacking inter­actions

Year:  2015        PMID: 26279863      PMCID: PMC4518966          DOI: 10.1107/S2056989015011044

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Although heterocycles, namely those bearing thia­zole or pyrimidine motifs, are reported to show a broad spectrum of pharmacological properties such as anti­microbial, anti­cancer and anti-inflammatory activities (Jiang et al., 2013 ▸; Mishra et al., 2015 ▸; Perrone et al., 2012 ▸), only a few compounds enclosing the thia­zolo[3,2a]pyrimidine framework have been explored and screened towards the above-mentioned pharmacological activities. Even though some derivatives tested up to now have shown inter­esting anti-inflammatory (Bekhit et al., 2003 ▸), anti­viral (Abd El-Galil et al., 2010 ▸) and anti­bacterial activities (Mulwad et al., 2010 ▸) and as calcium agonists (Balkan et al., 1992 ▸), the data acquired so far are insufficient to indicate the importance of the thia­zolo[3,2a]pyrimidine motif as a positive contributor to the biological profile mentioned above. The same reflection is valid in relation to the data acquired for some thia­zolo[3,2a]pyrimidine-5-one derivatives as 5-HT2a receptor antagonists, a putative therapeutic target for the treatment of depression, although they have structural similarity to ritanserin, a serotonin antagonist (Awadallah, 2008 ▸). In this last case, the pharmacological activity appears to be enhanced by the nature of the planar aromatic or heterocyclic ring systems, the type of spacer as well as the presence of a basic nitro­gen atom. A search made in the latest version (5.36.0; 2015) of the Cambridge Structural Database (Groom & Allen, 2014 ▸) for thia­zolo[3,2a]pyrimidine-5-one-based structures revealed the existence of 11 compounds containing the 5H-thia­zolo[3,2a]-pyrimidine-5-one fragment in which the hetero ring was not fused with other cyclic rings. In order to clarify the significance of the thia­zolo[3,2a]pyrimidine scaffold in medicinal chemistry, new 5H-thia­zolo[3,2-a]pyrimidin-5-one derivatives were synthesized. In this work we report the structures and synthesis, by a one-pot reaction, of two deriva­tives 6-(2-hy­droxy­benz­yl)-5H-thia­zolo[3,2-a]pyrimidin-5-one (1) and 6-(2-hy­droxy­benz­yl)-5H-thia­zolo[3,2-a]pyrimidin-3-methyl-5-one (2), which will be screened for anti­microbial activity.

Structural commentary

The mol­ecules of (1) and (2) are shown in Figs. 1 ▸ and 2 ▸. The structural characterization reveals that the mol­ecules have two cyclic units, viz. the hy­droxy­benzyl and the heterocyclic 5H-thia­zolo[3,2-a]pyrimidin-5-one ring separated by a carbonyl spacer, as expected. In both compounds, the carbonyl O atoms are trans oriented with respect to each other, contributing to the establishment of an intra­molecular O—H⋯O hydrogen bond between the o-hydroxyl group of the benzene ring and the carbonyl group of the spacer (Tables 1 ▸ and 2 ▸), which generates an S(6) ring. Taken together, the benzene ring and hydrogen-bonded pseudo ring are roughly planar, the carbonyl oxygen atom deviates by 0.391 (3) and 0.055 (4) Å in (1) and (2), respectively from the least-square plane formed by the benzene ring atoms. The heterocyclic rings of both compounds are also almost planar, as expected; the maximum deviation from the best plane formed by the ten atoms of the thia­zolo­pyrimidine moiety is 0.103 (1) Å for the carbonyl oxygen atom, O5, in (1) and 0.129 (1) Å for the same atom in (2). Thus, both mol­ecules are twisted around the C6—C67 bond that links the ring systems, which are inclined to one another by 55.22 (5) and 46.83 (6)° for (1) and (2), respectively.
Figure 1

A view of the asymmetric unit of (1) with displacement ellipsoids drawn at the 70% probability level.

Figure 2

A view of the asymmetric unit of (2) with displacement ellipsoids drawn at the 70% probability level.

Table 1

Hydrogen-bond geometry (Å, °) for (1)

D—H⋯A D—HH⋯A DA D—H⋯A
O62—H62A⋯O670.841.872.5906 (16)144
C2—H2⋯O5i 0.952.293.146 (2)150

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °) for (2)

D—H⋯A D—HH⋯A DA D—H⋯A
O62—H3⋯O670.841.812.557 (2)146
C64—H64⋯O5i 0.952.573.217 (3)125

Symmetry code: (i) .

Supra­molecular features

As noted above, the hydroxyl group is involved in intra­molecular hydrogen bonding, which leaves it unavailable for participation in inter­molecular hydrogen bonding. Thus, the mol­ecules are linked via weak C—H⋯O inter­actions: in both compounds the oxygen acceptor atom is the oxo atom O5, being in (1) the hydrogen-bond donor atom is C2 (of the heterocyclic group) and in (2) the hydrogen-bond donor atom is C64 (located in the exocyclic benzene ring). In (1) the mol­ecules are linked by the C2—H2O5 (x + , −y + , z + ) hydrogen bond, forming a C(6) chain, which runs parallel to [101] and results from the action of a c-glide at (0, , 0) (Table 1 ▸ and Fig. 3 ▸). The presence of the methyl group on atom C2 of the heterocyclic ring precludes the formation of a similar bond in (2). Thus in the supra­molecular structure of this compound, the mol­ecules are linked by a C64—H64⋯O5(−x + 2, y + , −z + 1) hydrogen bond, forming a C(9) chain, which runs parallel to the b-axis direction and results from the action of a 21 screw axis at (1, y, ) (Table 2 ▸ and Fig. 4 ▸).
Figure 3

Compound (1): Mol­ecular C6 chain which runs parallel to [101]. Symmetry codes: (i) x + , −y + , z + ; (ii) x − , −y + , z − . Hydrogen atoms not involved in the hydrogen bonding are omitted.

Figure 4

Compound (2): Mol­ecular C9 chain which runs parallel to the a-axis direction. Symmetry codes: (i) −x + 2, y + , −z + 1; (ii) −x + 2, y − , −z + 1. Hydrogen atoms not involved in the hydrogen bonding are omitted.

Both mol­ecules present aromatic π–π stacking contacts. In (1) there is a close contact between centrosymmetrically related rings containing atom C5 at (x, y, z) and (−x + 1, −y + 1, −z + 1) [centroid-to-centroid distance = 3.6764 (9) Å, perpendicular distance between rings = 3.2478 (6) Å and slippage = 1.723 Å]. In (2) the mol­ecules stack above each other along the a-axis direction with unit translation of 3.931 (2) Å [perpendicular distances between the rings (and slippages) of 3.3821 (9) (2.004), 3.3355 (9) (2.080), 3.4084 (9) (1.958) Å for the thia­zole, pyrimidine and benzene rings, respectively].

Database survey

As said before, a search made in the latest version (5.36.0; 2015) of the Cambridge Structural Database revealed the existence of 11 deposited compounds containing the 5H-thia­zolo[3,2a]-pyrimidine-5-one residue. Of those, eight were 2,3-di­hydro derivatives thus leaving only the compounds listed below. Fig. 5 ▸ shows representations of the compounds referred to in this work (the scaffold indicates the adopted numbering scheme for the 5H-thia­zolo[3,2a]-pyrimidine-5-one residue). Compounds (1) and (2) are herein characterized and the remaining are referred to by their CSD codes. GEFTES: 7-(methyl­sulfan­yl)-5H-[1,3]thia­zolo[3,2-a]pyrimidin-5-one (Bernhardt & Wentrup, 2012 ▸); JABRAG: 7-penta­fluoro­ethyl-6-tri­fluoro­methyl­thia­zolo[3,2-a]pyrimidine-5-one (Chi et al., 2002 ▸); NAMWEE: N-phenyl-6-methyl-5-oxo-5H-[1,3]-thia­zolo[3,2-a]pyrimidine-2-carboxamide (Volovenko et al., 2004 ▸); QIBNOF: 3-ethyl-2-(4-methyl­thia­zol-2-yl)thia­zolo[3,2-a]pyrimidin-4-one (Troisi et al., 2006 ▸); and TUFCAY: 3-benzoyl-7-methyl-5H-thia­zolo[3,2-a]pyrimidine-5-one (Elokhina et al., 1996 ▸). In those compounds, the C2—C3 bond length averages 1.329 (9) Å, typical for values for a Csp 2—Csp 2 bond length in thio­phenes (Allen et al., 1987 ▸). The average length of the C3—N4 bond at 1.397 (6) Å is slightly shorter than that for N4—C5, which is 1.418 (7) Å. The average values for the N4—C9 and C7—N8 bond lengths, 1.363 (7) and 1.357 (12) Å, respectively, are significantly shorter than the previous ones, suggesting the presence of a higher electronic density in that part of the rings. The N8—C9 average of 1.306 (9) Å is typical of a C=N bond.
Figure 5

Representations of the compounds referred to in this work (the scaffold indicates the adopted numbering scheme for the 5H-thia­zolo[3,2a]-pyrimidine-5-one residue).

Synthesis and crystallization

Compounds (1) and (2) were synthesized in moderate/high yields by a one-pot reaction using 4-oxo-4H-chromene-3-carb­oxy­lic acid as the starting material. Chromone-3-carb­oxy­lic acid was initially activated with benzotriazol-1-yl-oxy­tripyrrolidino­phospho­nium hexa­fluorido­phosphate (PyBOP). Then the in situ formed inter­mediate reacts with the hetero­amine (stoichiometry 1:1) giving rise to 5H-thia­zolo[3,2-a]pyrimidin-5-one derivatives (1) (68%) and (2) (81%). From a mechanistic point of view, the 6-(2-hy­droxy­benzo­yl)-5H-thia­zolo[3,2-a]pyrimidin-5-one derivatives may have been obtained by a nucleophilic attack of primary hetero­amine to the 2-position of the activated chromone with a subsequent opening of the pyran ring. Then, the heterocycle entities were obtained by a process involving an intra­molecular reaction assisted by the nitro­gen atom of the heterocycle moiety (see scheme below). Crystals were obtained by recrystallization from (1) in AcOEt (m.p. 454–456 K) in the form of colourless plates and from (2) in CH2Cl2 (m.p. 451–453 K) in the form of yellow blocks.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. H atoms were positioned geom­etrically and treated as riding atoms with C—H(aromatic) = 0.95 and O—H = 0.84 Å with U iso = 1.2U eq(C) or 1.5U eq(O).
Table 3

Experimental details

 (1)(2)
Crystal data
Chemical formulaC13H8N2O3SC14H10N2O3S
M r 272.27286.30
Crystal system, space groupMonoclinic, P21/n Monoclinic, P21
Temperature (K)100100
a, b, c (Å)7.5563 (5), 15.3187 (11), 10.1229 (7)3.931 (2), 10.459 (6), 14.657 (8)
β (°)99.49 (2)94.201 (14)
V3)1155.70 (15)601.0 (6)
Z 42
Radiation typeMo KαMo Kα
μ (mm−1)0.290.28
Crystal size (mm)0.33 × 0.21 × 0.040.26 × 0.13 × 0.09
 
Data collection
DiffractometerRigaku Saturn724+Rigaku Saturn724+
Absorption correctionMulti-scan CrystalClear-SM Expert (Rigaku, 2012)Multi-scan CrystalClear-SM Expert (Rigaku, 2012)
T min, T max 0.912, 0.9890.931, 0.975
No. of measured, independent and observed [I > 2σ(I)] reflections7713, 2632, 21354859, 3175, 2808
R int 0.0400.023
(sin θ/λ)max−1)0.6490.729
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.036, 0.096, 1.020.031, 0.067, 1.04
No. of reflections26323175
No. of parameters172183
No. of restraints01
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.38, −0.220.35, −0.34
Absolute structureFlack x determined using 981 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter−0.03 (4)

Computer programs: CrystalClear-SM Expert (Rigaku, 2012 ▸), SHELXS (Sheldrick, 2008 ▸), ShelXle (Hübschle et al., 2011 ▸), SHELXL2014 (Sheldrick, 2015 ▸), PLATON (Spek, 2009 ▸), Flipper 25 (Oszlányi & Sütő, 2004 ▸), OSCAIL (McArdle et al., 2004 ▸) and Mercury (Macrae et al., 2006 ▸).

Crystal structure: contains datablock(s) general, 1, 2. DOI: 10.1107/S2056989015011044/hb7437sup1.cif Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989015011044/hb74371sup2.hkl Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989015011044/hb74372sup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011044/hb74371sup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011044/hb74372sup5.cml CCDC references: 1405409, 1405408 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H8N2O3SF(000) = 560
Mr = 272.27Dx = 1.565 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71075 Å
a = 7.5563 (5) ÅCell parameters from 7040 reflections
b = 15.3187 (11) Åθ = 2.4–27.5°
c = 10.1229 (7) ŵ = 0.28 mm1
β = 99.49 (2)°T = 100 K
V = 1155.70 (15) Å3Plate, colourless
Z = 40.33 × 0.21 × 0.04 mm
Rigaku Saturn724+ (2x2 bin mode) diffractometer2632 independent reflections
Radiation source: Sealed Tube2135 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.040
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.1°
profile data from ω–scansh = −8→9
Absorption correction: multi-scan CrystalClear-SM Expert (Rigaku, 2012)k = −16→19
Tmin = 0.912, Tmax = 0.989l = −13→10
7713 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0485P)2 + 0.3293P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
2632 reflectionsΔρmax = 0.38 e Å3
172 parametersΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.53044 (5)0.47242 (3)0.82245 (4)0.01896 (13)
O50.13953 (16)0.30924 (7)0.48703 (11)0.0220 (3)
O62−0.16684 (15)0.43565 (8)0.04276 (11)0.0244 (3)
H62A−0.15490.47870.09490.037*
O67−0.03352 (15)0.51893 (7)0.25912 (11)0.0202 (3)
N40.32960 (17)0.39593 (9)0.62970 (12)0.0153 (3)
N80.35861 (18)0.54953 (9)0.59756 (13)0.0182 (3)
C20.4957 (2)0.36098 (11)0.83142 (15)0.0200 (3)
H20.54820.32540.90440.024*
C30.3863 (2)0.33073 (11)0.72355 (15)0.0184 (3)
H30.35100.27130.71210.022*
C50.2084 (2)0.38137 (11)0.50752 (15)0.0167 (3)
C60.1834 (2)0.45847 (10)0.42710 (14)0.0157 (3)
C70.2532 (2)0.53721 (11)0.47770 (15)0.0174 (3)
H70.22440.58730.42320.021*
C90.3934 (2)0.47688 (10)0.66844 (15)0.0159 (3)
C610.1006 (2)0.39010 (10)0.19292 (14)0.0162 (3)
C62−0.0209 (2)0.38331 (11)0.07150 (15)0.0184 (3)
C630.0072 (2)0.32092 (11)−0.02354 (16)0.0219 (4)
H62−0.07740.3146−0.10350.026*
C640.1571 (2)0.26854 (11)−0.00138 (16)0.0217 (4)
H640.17520.2264−0.06660.026*
C650.2832 (2)0.27646 (11)0.11565 (16)0.0201 (3)
H650.38810.24130.12890.024*
C660.2531 (2)0.33623 (10)0.21201 (15)0.0178 (3)
H660.33720.34090.29260.021*
C670.0738 (2)0.45816 (10)0.29057 (15)0.0160 (3)
U11U22U33U12U13U23
S10.0213 (2)0.0200 (2)0.01334 (19)−0.00121 (15)−0.00382 (14)0.00147 (15)
O50.0276 (6)0.0188 (6)0.0182 (6)−0.0057 (5)−0.0003 (5)−0.0008 (4)
O620.0242 (6)0.0272 (7)0.0184 (6)0.0057 (5)−0.0068 (5)−0.0042 (5)
O670.0210 (6)0.0209 (6)0.0167 (5)0.0045 (5)−0.0025 (4)−0.0006 (4)
N40.0172 (6)0.0143 (7)0.0140 (6)0.0011 (5)0.0008 (5)0.0005 (5)
N80.0209 (7)0.0164 (7)0.0151 (6)0.0003 (5)−0.0038 (5)−0.0002 (5)
C20.0231 (8)0.0204 (9)0.0160 (7)0.0034 (6)0.0019 (6)0.0034 (6)
C30.0235 (8)0.0150 (8)0.0166 (7)0.0028 (6)0.0033 (6)0.0039 (6)
C50.0161 (7)0.0188 (9)0.0148 (7)−0.0002 (6)0.0015 (6)−0.0025 (6)
C60.0164 (7)0.0177 (9)0.0122 (7)0.0015 (6)−0.0004 (6)−0.0016 (6)
C70.0181 (7)0.0174 (9)0.0154 (7)0.0019 (6)−0.0014 (6)0.0008 (6)
C90.0158 (7)0.0156 (8)0.0153 (7)0.0001 (6)−0.0007 (6)−0.0009 (6)
C610.0179 (7)0.0161 (8)0.0136 (7)−0.0025 (6)0.0002 (6)−0.0002 (6)
C620.0193 (7)0.0181 (9)0.0164 (7)−0.0009 (6)−0.0013 (6)0.0013 (6)
C630.0283 (8)0.0211 (9)0.0145 (7)−0.0042 (7)−0.0017 (6)−0.0004 (6)
C640.0328 (9)0.0163 (9)0.0165 (7)−0.0029 (7)0.0059 (7)−0.0021 (6)
C650.0241 (8)0.0163 (9)0.0200 (8)0.0015 (6)0.0043 (6)0.0006 (6)
C660.0196 (8)0.0171 (9)0.0160 (7)−0.0015 (6)0.0007 (6)0.0005 (6)
C670.0153 (7)0.0162 (8)0.0158 (7)−0.0014 (6)0.0004 (6)0.0016 (6)
S1—C91.7248 (16)C6—C71.381 (2)
S1—C21.7318 (17)C6—C671.489 (2)
O5—C51.225 (2)C7—H70.9500
O62—C621.3559 (19)C61—C661.404 (2)
O62—H62A0.8405C61—C621.411 (2)
O67—C671.2413 (19)C61—C671.473 (2)
N4—C91.364 (2)C62—C631.397 (2)
N4—C31.396 (2)C63—C641.376 (2)
N4—C51.4298 (19)C63—H620.9500
N8—C91.327 (2)C64—C651.397 (2)
N8—C71.3503 (19)C64—H640.9500
C2—C31.339 (2)C65—C661.384 (2)
C2—H20.9500C65—H650.9500
C3—H30.9500C66—H660.9500
C5—C61.429 (2)
C9—S1—C290.74 (7)N4—C9—S1110.78 (11)
C62—O62—H62A109.3C66—C61—C62118.53 (14)
C9—N4—C3113.61 (13)C66—C61—C67121.59 (14)
C9—N4—C5122.40 (13)C62—C61—C67119.65 (14)
C3—N4—C5123.91 (13)O62—C62—C63117.85 (14)
C9—N8—C7113.80 (14)O62—C62—C61122.18 (14)
C3—C2—S1112.14 (12)C63—C62—C61119.97 (15)
C3—C2—H2123.9C64—C63—C62120.06 (15)
S1—C2—H2123.9C64—C63—H62120.0
C2—C3—N4112.72 (15)C62—C63—H62120.0
C2—C3—H3123.6C63—C64—C65121.00 (15)
N4—C3—H3123.6C63—C64—H64119.5
O5—C5—N4118.75 (14)C65—C64—H64119.5
O5—C5—C6129.54 (14)C66—C65—C64119.14 (15)
N4—C5—C6111.69 (13)C66—C65—H65120.4
C7—C6—C5120.26 (14)C64—C65—H65120.4
C7—C6—C67117.84 (14)C65—C66—C61121.21 (15)
C5—C6—C67121.81 (13)C65—C66—H66119.4
N8—C7—C6126.02 (15)C61—C66—H66119.4
N8—C7—H7117.0O67—C67—C61120.99 (14)
C6—C7—H7117.0O67—C67—C6118.38 (14)
N8—C9—N4125.30 (14)C61—C67—C6120.53 (13)
N8—C9—S1123.91 (12)
C9—S1—C2—C3−0.18 (13)C2—S1—C9—N8−179.59 (14)
S1—C2—C3—N40.97 (18)C2—S1—C9—N4−0.67 (12)
C9—N4—C3—C2−1.52 (19)C66—C61—C62—O62−176.96 (15)
C5—N4—C3—C2−178.23 (13)C67—C61—C62—O62−2.4 (2)
C9—N4—C5—O5−171.08 (14)C66—C61—C62—C633.3 (2)
C3—N4—C5—O55.4 (2)C67—C61—C62—C63177.80 (14)
C9—N4—C5—C67.34 (19)O62—C62—C63—C64177.45 (15)
C3—N4—C5—C6−176.23 (13)C61—C62—C63—C64−2.8 (2)
O5—C5—C6—C7170.03 (16)C62—C63—C64—C650.1 (3)
N4—C5—C6—C7−8.2 (2)C63—C64—C65—C661.9 (2)
O5—C5—C6—C67−6.4 (3)C64—C65—C66—C61−1.4 (2)
N4—C5—C6—C67175.39 (13)C62—C61—C66—C65−1.2 (2)
C9—N8—C7—C60.0 (2)C67—C61—C66—C65−175.63 (14)
C5—C6—C7—N85.1 (2)C66—C61—C67—O67161.58 (15)
C67—C6—C7—N8−178.29 (14)C62—C61—C67—O67−12.8 (2)
C7—N8—C9—N4−1.1 (2)C66—C61—C67—C6−14.7 (2)
C7—N8—C9—S1177.67 (11)C62—C61—C67—C6170.93 (14)
C3—N4—C9—N8−179.75 (14)C7—C6—C67—O67−40.9 (2)
C5—N4—C9—N8−3.0 (2)C5—C6—C67—O67135.67 (15)
C3—N4—C9—S11.35 (16)C7—C6—C67—C61135.52 (15)
C5—N4—C9—S1178.12 (10)C5—C6—C67—C61−48.0 (2)
D—H···AD—HH···AD···AD—H···A
O62—H62A···O670.841.872.5906 (16)144
C2—H2···O5i0.952.293.146 (2)150
C14H10N2O3SF(000) = 296
Mr = 286.30Dx = 1.582 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71075 Å
a = 3.931 (2) ÅCell parameters from 1337 reflections
b = 10.459 (6) Åθ = 2.4–31.1°
c = 14.657 (8) ŵ = 0.28 mm1
β = 94.201 (14)°T = 100 K
V = 601.0 (6) Å3Block, yellow
Z = 20.26 × 0.13 × 0.09 mm
Rigaku Saturn724+ (2x2 bin mode) diffractometer3175 independent reflections
Radiation source: Rotating Anode2808 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.023
Detector resolution: 28.5714 pixels mm-1θmax = 31.2°, θmin = 2.4°
profile data from ω–scansh = −5→5
Absorption correction: multi-scan CrystalClear-SM Expert (Rigaku, 2012)k = −14→14
Tmin = 0.931, Tmax = 0.975l = −18→20
4859 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.031w = 1/[σ2(Fo2) + (0.0296P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.067(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.35 e Å3
3175 reflectionsΔρmin = −0.33 e Å3
183 parametersAbsolute structure: Flack x determined using 981 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: −0.03 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.15253 (13)0.38511 (5)0.04641 (4)0.01618 (13)
O620.9984 (4)1.04996 (14)0.34842 (12)0.0214 (4)
H30.98141.03010.29270.032*
O50.8745 (4)0.55020 (15)0.29853 (11)0.0183 (3)
O670.8149 (4)0.91654 (14)0.20714 (11)0.0197 (4)
N40.4972 (4)0.49139 (17)0.17956 (13)0.0138 (4)
N80.2366 (5)0.63883 (18)0.07249 (13)0.0159 (4)
C20.3438 (5)0.2885 (2)0.13351 (16)0.0155 (4)
C30.5170 (5)0.3595 (2)0.19717 (15)0.0155 (5)
H3A0.64120.32410.24920.019*
C50.6695 (5)0.5856 (2)0.23699 (16)0.0146 (4)
C60.5742 (5)0.7132 (2)0.20851 (15)0.0129 (4)
C70.3746 (5)0.7315 (2)0.12859 (16)0.0156 (4)
H70.32880.81750.11080.019*
C90.3047 (5)0.5225 (2)0.10207 (15)0.0143 (4)
C210.3011 (6)0.1472 (2)0.13112 (17)0.0196 (5)
H21A0.41770.10970.18610.029*
H21B0.39970.11280.07670.029*
H21C0.05780.12600.12890.029*
C610.7116 (5)0.8455 (2)0.35577 (15)0.0142 (4)
C620.8621 (5)0.9562 (2)0.39773 (16)0.0157 (5)
C630.8759 (5)0.9700 (2)0.49229 (17)0.0177 (5)
H630.98291.04290.52050.021*
C640.7340 (5)0.8779 (2)0.54512 (15)0.0182 (4)
H640.74640.88780.60970.022*
C650.5725 (5)0.7705 (2)0.50554 (16)0.0174 (5)
H650.47210.70870.54270.021*
C660.5602 (5)0.7550 (2)0.41204 (15)0.0151 (4)
H660.44830.68240.38490.018*
C670.7112 (5)0.8297 (2)0.25681 (15)0.0150 (4)
U11U22U33U12U13U23
S10.0175 (2)0.0166 (3)0.0143 (2)−0.0011 (2)−0.00033 (18)−0.0012 (2)
O620.0274 (8)0.0165 (8)0.0203 (9)−0.0060 (7)0.0026 (7)0.0000 (7)
O50.0213 (8)0.0179 (8)0.0148 (8)0.0035 (7)−0.0049 (7)−0.0009 (7)
O670.0249 (8)0.0161 (9)0.0182 (8)−0.0015 (6)0.0026 (6)0.0025 (6)
N40.0149 (8)0.0143 (10)0.0121 (9)0.0016 (7)0.0009 (7)0.0007 (7)
N80.0173 (9)0.0180 (10)0.0124 (9)0.0006 (8)−0.0001 (7)−0.0003 (8)
C20.0154 (10)0.0164 (11)0.0150 (11)−0.0002 (9)0.0032 (8)0.0009 (9)
C30.0165 (9)0.0159 (12)0.0144 (11)0.0029 (8)0.0025 (8)0.0032 (8)
C50.0138 (9)0.0173 (11)0.0131 (11)−0.0003 (9)0.0026 (8)−0.0023 (9)
C60.0157 (9)0.0119 (10)0.0114 (11)0.0004 (8)0.0033 (8)0.0001 (8)
C70.0178 (10)0.0147 (11)0.0144 (11)0.0016 (9)0.0027 (8)0.0010 (8)
C90.0124 (9)0.0179 (11)0.0123 (11)0.0008 (9)0.0000 (8)−0.0023 (9)
C210.0220 (11)0.0163 (11)0.0204 (13)−0.0019 (10)0.0011 (9)−0.0017 (10)
C610.0138 (9)0.0138 (11)0.0150 (11)0.0020 (8)0.0008 (8)0.0002 (8)
C620.0144 (9)0.0134 (11)0.0193 (12)0.0009 (8)0.0009 (8)−0.0001 (8)
C630.0168 (10)0.0145 (11)0.0215 (12)0.0003 (9)−0.0018 (9)−0.0048 (9)
C640.0189 (9)0.0211 (11)0.0144 (10)0.0038 (12)−0.0006 (8)−0.0022 (11)
C650.0188 (10)0.0142 (11)0.0191 (11)0.0017 (9)0.0015 (9)0.0016 (9)
C660.0168 (10)0.0117 (10)0.0166 (11)0.0012 (8)0.0006 (8)−0.0012 (8)
C670.0148 (10)0.0142 (10)0.0160 (11)0.0029 (8)0.0011 (9)0.0030 (9)
S1—C91.737 (2)C6—C671.490 (3)
S1—C21.754 (2)C7—H70.9500
O62—C621.352 (3)C21—H21A0.9800
O62—H30.8400C21—H21B0.9800
O5—C51.222 (3)C21—H21C0.9800
O67—C671.251 (3)C61—C661.415 (3)
N4—C91.357 (3)C61—C621.419 (3)
N4—C31.404 (3)C61—C671.460 (3)
N4—C51.434 (3)C62—C631.391 (3)
N8—C91.313 (3)C63—C641.379 (3)
N8—C71.358 (3)C63—H630.9500
C2—C31.339 (3)C64—C651.396 (3)
C2—C211.487 (3)C64—H640.9500
C3—H3A0.9500C65—C661.377 (3)
C5—C61.439 (3)C65—H650.9500
C6—C71.375 (3)C66—H660.9500
C9—S1—C291.17 (12)H21A—C21—H21B109.5
C62—O62—H3109.5C2—C21—H21C109.5
C9—N4—C3114.16 (19)H21A—C21—H21C109.5
C9—N4—C5122.48 (18)H21B—C21—H21C109.5
C3—N4—C5123.4 (2)C66—C61—C62118.2 (2)
C9—N8—C7113.5 (2)C66—C61—C67122.2 (2)
C3—C2—C21128.2 (2)C62—C61—C67119.57 (19)
C3—C2—S1110.87 (17)O62—C62—C63118.0 (2)
C21—C2—S1120.92 (18)O62—C62—C61121.9 (2)
C2—C3—N4113.5 (2)C63—C62—C61120.10 (19)
C2—C3—H3A123.3C64—C63—C62119.9 (2)
N4—C3—H3A123.3C64—C63—H63120.0
O5—C5—N4118.9 (2)C62—C63—H63120.0
O5—C5—C6129.7 (2)C63—C64—C65121.3 (2)
N4—C5—C6111.41 (19)C63—C64—H64119.4
C7—C6—C5119.8 (2)C65—C64—H64119.4
C7—C6—C67117.0 (2)C66—C65—C64119.3 (2)
C5—C6—C67122.88 (19)C66—C65—H65120.3
N8—C7—C6126.4 (2)C64—C65—H65120.3
N8—C7—H7116.8C65—C66—C61121.1 (2)
C6—C7—H7116.8C65—C66—H66119.5
N8—C9—N4125.9 (2)C61—C66—H66119.5
N8—C9—S1123.84 (17)O67—C67—C61121.3 (2)
N4—C9—S1110.26 (16)O67—C67—C6116.06 (19)
C2—C21—H21A109.5C61—C67—C6122.63 (18)
C2—C21—H21B109.5
C9—S1—C2—C3−1.90 (17)C5—N4—C9—S1176.89 (15)
C9—S1—C2—C21177.56 (18)C2—S1—C9—N8−177.19 (19)
C21—C2—C3—N4−178.26 (19)C2—S1—C9—N42.17 (15)
S1—C2—C3—N41.1 (2)C66—C61—C62—O62−176.97 (19)
C9—N4—C3—C20.5 (3)C67—C61—C62—O621.8 (3)
C5—N4—C3—C2−178.30 (19)C66—C61—C62—C633.7 (3)
C9—N4—C5—O5−170.18 (19)C67—C61—C62—C63−177.5 (2)
C3—N4—C5—O58.6 (3)O62—C62—C63—C64178.71 (19)
C9—N4—C5—C67.7 (3)C61—C62—C63—C64−1.9 (3)
C3—N4—C5—C6−173.54 (18)C62—C63—C64—C65−0.6 (3)
O5—C5—C6—C7170.2 (2)C63—C64—C65—C661.2 (3)
N4—C5—C6—C7−7.4 (3)C64—C65—C66—C610.7 (3)
O5—C5—C6—C67−3.2 (4)C62—C61—C66—C65−3.1 (3)
N4—C5—C6—C67179.16 (18)C67—C61—C66—C65178.16 (19)
C9—N8—C7—C61.3 (3)C66—C61—C67—O67172.6 (2)
C5—C6—C7—N83.4 (3)C62—C61—C67—O67−6.1 (3)
C67—C6—C7—N8177.25 (19)C66—C61—C67—C6−4.5 (3)
C7—N8—C9—N4−1.1 (3)C62—C61—C67—C6176.78 (18)
C7—N8—C9—S1178.13 (16)C7—C6—C67—O67−40.7 (3)
C3—N4—C9—N8177.37 (19)C5—C6—C67—O67133.0 (2)
C5—N4—C9—N8−3.8 (3)C7—C6—C67—C61136.6 (2)
C3—N4—C9—S1−2.0 (2)C5—C6—C67—C61−49.8 (3)
D—H···AD—HH···AD···AD—H···A
O62—H3···O670.841.812.557 (2)146
C64—H64···O5i0.952.573.217 (3)125
  11 in total

1.  Ab initio structure solution by charge flipping.

Authors:  Gábor Oszlányi; András Süto
Journal:  Acta Crystallogr A       Date:  2004-02-17       Impact factor: 2.290

2.  Diarylheterocycle core ring features effect in selective COX-1 inhibition.

Authors:  Maria Grazia Perrone; Paola Vitale; Paola Malerba; Angela Altomare; Rosanna Rizzi; Antonio Lavecchia; Carmen Di Giovanni; Ettore Novellino; Antonio Scilimati
Journal:  ChemMedChem       Date:  2012-01-25       Impact factor: 3.466

3.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

4.  Discovery of highly potent triazole antifungal derivatives by heterocycle-benzene bioisosteric replacement.

Authors:  Zhigan Jiang; Yan Wang; Wenya Wang; Shengzheng Wang; Bo Xu; Guorong Fan; Guoqiang Dong; Yang Liu; Jianzhong Yao; Zhenyuan Miao; Wannian Zhang; Chunquan Sheng
Journal:  Eur J Med Chem       Date:  2013-04-17       Impact factor: 6.514

5.  Design and synthesis of some substituted 1H-pyrazolyl-thiazolo[4,5-d]pyrimidines as anti-inflammatory-antimicrobial Agents.

Authors:  Adnan A Bekhit; Hesham T Y Fahmy; Sherif A F Rostom; Azza M Baraka
Journal:  Eur J Med Chem       Date:  2003-01       Impact factor: 6.514

6.  Thiazolo[3,2-a]pyrimidine derivatives as calcium antagonists.

Authors:  A Balkan; S Uma; M Ertan; W Wiegrebe
Journal:  Pharmazie       Date:  1992-09       Impact factor: 1.267

7.  ShelXle: a Qt graphical user interface for SHELXL.

Authors:  Christian B Hübschle; George M Sheldrick; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2011-11-12       Impact factor: 3.304

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.