Literature DB >> 26275922

Comparative mapping of host-pathogen protein-protein interactions.

Priya S Shah1, Jason A Wojcechowskyj2, Manon Eckhardt2, Nevan J Krogan3.   

Abstract

Pathogens usurp a variety of host pathways via protein-protein interactions to ensure efficient pathogen replication. Despite the existence of an impressive toolkit of systematic and unbiased approaches, we still lack a comprehensive list of these PPIs and an understanding of their functional implications. Here, we highlight the importance of harnessing genetic diversity of hosts and pathogens for uncovering the biochemical basis of pathogen restriction, virulence, fitness, and pathogenesis. We further suggest that integrating physical interaction data with orthogonal types of data will allow researchers to draw meaningful conclusions both for basic and translational science.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26275922      PMCID: PMC4659747          DOI: 10.1016/j.mib.2015.07.008

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  58 in total

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Authors:  Ileana M Cristea; Heather Rozjabek; Kelly R Molloy; Sophiya Karki; Laura L White; Charles M Rice; Michael P Rout; Brian T Chait; Margaret R MacDonald
Journal:  J Virol       Date:  2010-04-14       Impact factor: 5.103

2.  Interactions between secreted GRA proteins and host cell proteins across the paratitophorous vacuolar membrane in the parasitism of Toxoplasma gondii.

Authors:  Hye-Jin Ahn; Sehra Kim; Hee-Eun Kim; Ho-Woo Nam
Journal:  Korean J Parasitol       Date:  2006-12       Impact factor: 1.341

Review 3.  Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry.

Authors:  Andrea Sinz
Journal:  Anal Bioanal Chem       Date:  2010-01-15       Impact factor: 4.142

4.  A targeted spatial-temporal proteomics approach implicates multiple cellular trafficking pathways in human cytomegalovirus virion maturation.

Authors:  Nathaniel J Moorman; Ronit Sharon-Friling; Thomas Shenk; Ileana M Cristea
Journal:  Mol Cell Proteomics       Date:  2009-12-20       Impact factor: 5.911

5.  Lentiviral Vif degrades the APOBEC3Z3/APOBEC3H protein of its mammalian host and is capable of cross-species activity.

Authors:  Rebecca S Larue; Joy Lengyel; Stefán R Jónsson; Valgerdur Andrésdóttir; Reuben S Harris
Journal:  J Virol       Date:  2010-06-02       Impact factor: 5.103

6.  Human host factors required for influenza virus replication.

Authors:  Renate König; Silke Stertz; Yingyao Zhou; Atsushi Inoue; H-Heinrich Hoffmann; Suchita Bhattacharyya; Judith G Alamares; Donna M Tscherne; Mila B Ortigoza; Yuhong Liang; Qinshan Gao; Shane E Andrews; Sourav Bandyopadhyay; Paul De Jesus; Buu P Tu; Lars Pache; Crystal Shih; Anthony Orth; Ghislain Bonamy; Loren Miraglia; Trey Ideker; Adolfo García-Sastre; John A T Young; Peter Palese; Megan L Shaw; Sumit K Chanda
Journal:  Nature       Date:  2010-02-11       Impact factor: 49.962

7.  A genome-wide genetic screen for host factors required for hepatitis C virus propagation.

Authors:  Qisheng Li; Abraham L Brass; Aylwin Ng; Zongyi Hu; Ramnik J Xavier; T Jake Liang; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-27       Impact factor: 11.205

8.  A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.

Authors:  Sagi D Shapira; Irit Gat-Viks; Bennett O V Shum; Amelie Dricot; Marciela M de Grace; Liguo Wu; Piyush B Gupta; Tong Hao; Serena J Silver; David E Root; David E Hill; Aviv Regev; Nir Hacohen
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

Review 9.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

10.  RNAi screen in Drosophila cells reveals the involvement of the Tom complex in Chlamydia infection.

Authors:  Isabelle Derré; Marc Pypaert; Alice Dautry-Varsat; Hervé Agaisse
Journal:  PLoS Pathog       Date:  2007-10-26       Impact factor: 6.823

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  20 in total

1.  An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses.

Authors:  Bennett H Penn; Zoe Netter; Jeffrey R Johnson; John Von Dollen; Gwendolyn M Jang; Tasha Johnson; Yamini M Ohol; Cyrus Maher; Samantha L Bell; Kristina Geiger; Guillaume Golovkine; Xiaotang Du; Alex Choi; Trevor Parry; Bhopal C Mohapatra; Matthew D Storck; Hamid Band; Chen Chen; Stefanie Jäger; Michael Shales; Dan A Portnoy; Ryan Hernandez; Laurent Coscoy; Jeffery S Cox; Nevan J Krogan
Journal:  Mol Cell       Date:  2018-08-16       Impact factor: 17.970

Review 2.  Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring.

Authors:  Charlotte Nicod; Amir Banaei-Esfahani; Ben C Collins
Journal:  Curr Opin Microbiol       Date:  2017-08-11       Impact factor: 7.934

3.  The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.

Authors:  Alexander Rialdi; Judd Hultquist; David Jimenez-Morales; Zuleyma Peralta; Laura Campisi; Romain Fenouil; Natasha Moshkina; Zhen Zhen Wang; Brice Laffleur; Robyn M Kaake; Michael J McGregor; Kelsey Haas; Evangelos Pefanis; Randy A Albrecht; Lars Pache; Sumit Chanda; Joanna Jen; Jordi Ochando; Minji Byun; Uttiya Basu; Adolfo García-Sastre; Nevan Krogan; Harm van Bakel; Ivan Marazzi
Journal:  Cell       Date:  2017-05-04       Impact factor: 41.582

4.  Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis.

Authors:  Priya S Shah; Nichole Link; Gwendolyn M Jang; Phillip P Sharp; Tongtong Zhu; Danielle L Swaney; Jeffrey R Johnson; John Von Dollen; Holly R Ramage; Laura Satkamp; Billy Newton; Ruth Hüttenhain; Marine J Petit; Tierney Baum; Amanda Everitt; Orly Laufman; Michel Tassetto; Michael Shales; Erica Stevenson; Gabriel N Iglesias; Leila Shokat; Shashank Tripathi; Vinod Balasubramaniam; Laurence G Webb; Sebastian Aguirre; A Jeremy Willsey; Adolfo Garcia-Sastre; Katherine S Pollard; Sara Cherry; Andrea V Gamarnik; Ivan Marazzi; Jack Taunton; Ana Fernandez-Sesma; Hugo J Bellen; Raul Andino; Nevan J Krogan
Journal:  Cell       Date:  2018-12-13       Impact factor: 41.582

Review 5.  The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders.

Authors:  A Jeremy Willsey; Montana T Morris; Sheng Wang; Helen R Willsey; Nawei Sun; Nia Teerikorpi; Tierney B Baum; Gerard Cagney; Kevin J Bender; Tejal A Desai; Deepak Srivastava; Graeme W Davis; Jennifer Doudna; Edward Chang; Vikaas Sohal; Daniel H Lowenstein; Hao Li; David Agard; Michael J Keiser; Brian Shoichet; Mark von Zastrow; Lennart Mucke; Steven Finkbeiner; Li Gan; Nenad Sestan; Michael E Ward; Ruth Huttenhain; Tomasz J Nowakowski; Hugo J Bellen; Loren M Frank; Mustafa K Khokha; Richard P Lifton; Martin Kampmann; Trey Ideker; Matthew W State; Nevan J Krogan
Journal:  Cell       Date:  2018-07-26       Impact factor: 41.582

6.  In silico study of chikungunya polymerase, a potential target for inhibitors.

Authors:  Ritu Ghildiyal; Sanjay Gupta; Reema Gabrani; Gopal Joshi; Amita Gupta; V K Chaudhary; Vandana Gupta
Journal:  Virusdisease       Date:  2019-10-26

7.  ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection.

Authors:  Ruth Hüttenhain; Jiewei Xu; Lily A Burton; David E Gordon; Judd F Hultquist; Jeffrey R Johnson; Laura Satkamp; Joseph Hiatt; David Y Rhee; Kheewoong Baek; David C Crosby; Alan D Frankel; Alexander Marson; J Wade Harper; Arno F Alpi; Brenda A Schulman; John D Gross; Nevan J Krogan
Journal:  Cell Host Microbe       Date:  2019-06-25       Impact factor: 21.023

8.  Quantitative Assessment of the Effects of Trypsin Digestion Methods on Affinity Purification-Mass Spectrometry-based Protein-Protein Interaction Analysis.

Authors:  Yueqing Zhang; Hong Sun; Jing Zhang; Allan R Brasier; Yingxin Zhao
Journal:  J Proteome Res       Date:  2017-07-20       Impact factor: 4.466

Review 9.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

10.  Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.

Authors:  Manon Eckhardt; Wei Zhang; Andrew M Gross; John Von Dollen; Jeffrey R Johnson; Kathleen E Franks-Skiba; Danielle L Swaney; Tasha L Johnson; Gwendolyn M Jang; Priya S Shah; Toni M Brand; Jacques Archambault; Jason F Kreisberg; Jennifer R Grandis; Trey Ideker; Nevan J Krogan
Journal:  Cancer Discov       Date:  2018-09-12       Impact factor: 39.397

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