Literature DB >> 26274468

On the Coupling between the Collective Dynamics of Proteins and Their Hydration Water.

Valeria Conti Nibali1, Giovanna D'Angelo1, Alessandro Paciaroni2, Douglas J Tobias3, Mounir Tarek4.   

Abstract

Picosecond time scale dynamics of hydrated proteins has been connected with the onset of biological activity as it coincides with solvent-solute hydrogen bond rearrangements and amino acid rotational relaxation time scales. The presence and fluctuations of protein hydration water (PHW) largely influence protein motions that are believed to be slaved to those of the solvent, yet to date, how protein and hydration water dynamics are coupled remains unclear. Here, we provide a significant advance in characterizing this coupling; we present the first full study of both the longitudinal and transverse coherent collective motions in a protein-solvent system. The data show unexpectedly the presence in the water dynamics of collective modes belonging to the protein. The properties of these modes, in particular, their propagation velocities and amplitudes, indicate a strengthening of the interactions and a higher rigidity of the network of solvent molecules close to the protein surface. Accordingly, the present study presents the most compelling and clear evidence of a very strong dynamical coupling between a protein and its hydration water, previously suggested by studies using various experimental techniques.

Entities:  

Keywords:  dispersion curves; longitudinal modes; molecular dynamics simulations; neutron and X-ray scattering; transverse modes

Year:  2014        PMID: 26274468     DOI: 10.1021/jz500023e

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  12 in total

1.  Structural Relaxation Processes and Collective Dynamics of Water in Biomolecular Environments.

Authors:  Sara Capponi; Stephen H White; Douglas J Tobias; Matthias Heyden
Journal:  J Phys Chem B       Date:  2019-01-02       Impact factor: 2.991

2.  Pressure effects on collective density fluctuations in water and protein solutions.

Authors:  Daniela Russo; Alessio Laloni; Alessandra Filabozzi; Matthias Heyden
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

3.  Solvent Vibrations as a Proxy of the Telomere G-Quadruplex Rearrangements across Thermal Unfolding.

Authors:  Valeria Libera; Federico Bianchi; Barbara Rossi; Francesco D'Amico; Claudio Masciovecchio; Caterina Petrillo; Francesco Sacchetti; Alessandro Paciaroni; Lucia Comez
Journal:  Int J Mol Sci       Date:  2022-05-04       Impact factor: 6.208

4.  Mesodomain and Protein-Associated Solvent Phases with Temperature-Tunable (200-265 K) Dynamics Surround Ethanolamine Ammonia-Lyase in Globally Polycrystalline Aqueous Solution Containing Dimethyl Sulfoxide.

Authors:  Benjamen Nforneh; Kurt Warncke
Journal:  J Phys Chem B       Date:  2017-12-01       Impact factor: 2.991

Review 5.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

6.  Vibrational resonance, allostery, and activation in rhodopsin-like G protein-coupled receptors.

Authors:  Kristina N Woods; Jürgen Pfeffer; Arpana Dutta; Judith Klein-Seetharaman
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

7.  On the existence of soliton-like collective modes in liquid water at the viscoelastic crossover.

Authors:  V E Zakhvataev; L A Kompaniets
Journal:  Sci Rep       Date:  2021-03-08       Impact factor: 4.379

8.  New insights into the microscopic interactions associated with the physical mechanism of action of highly diluted biologics.

Authors:  Kristina N Woods
Journal:  Sci Rep       Date:  2021-07-02       Impact factor: 4.379

9.  Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme.

Authors:  Michael C Thompson; Benjamin A Barad; Alexander M Wolff; Hyun Sun Cho; Friedrich Schotte; Daniel M C Schwarz; Philip Anfinrud; James S Fraser
Journal:  Nat Chem       Date:  2019-09-16       Impact factor: 24.427

10.  Experimental mapping of short-wavelength phonons in proteins.

Authors:  Utsab R Shrestha; Eugene Mamontov; Hugh M O'Neill; Qiu Zhang; Alexander I Kolesnikov; Xiangqiang Chu
Journal:  Innovation (Camb)       Date:  2021-12-17
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