Literature DB >> 26265144

The long non-coding RNA world in yeasts.

Akira Yamashita1, Yuichi Shichino2, Masayuki Yamamoto3.   

Abstract

In recent years, it has become evident that eukaryotic genomes are pervasively transcribed and produce numerous non-coding transcripts, including long non-coding RNAs (lncRNAs). Although research of such genomic enigmas is in the early stages, a growing number of lncRNAs have been characterized and found to be principal actors in a variety of biological processes rather than merely representing transcriptional noise. Here, we review recent findings on lncRNAs in yeast systems. We especially focus on lncRNA-mediated cellular regulations to respond to environmental changes in the budding yeast Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This article is part of a Special Issue entitled: Clues to long noncoding RNA taxonomy1, edited by Dr. Tetsuro Hirose and Dr. Shinichi Nakagawa.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Long non-coding RNA; Saccharomyces cerevisiae; Schizosaccharomyces pombe

Mesh:

Substances:

Year:  2015        PMID: 26265144     DOI: 10.1016/j.bbagrm.2015.08.003

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  32 in total

1.  LncRNAs: Bridging environmental sensing and gene expression.

Authors:  Zachary T Beck; Zheng Xing; Elizabeth J Tran
Journal:  RNA Biol       Date:  2016-10-04       Impact factor: 4.652

Review 2.  lncRedibly versatile: biochemical and biological functions of long noncoding RNAs.

Authors:  Emily J Shields; Ana F Petracovici; Roberto Bonasio
Journal:  Biochem J       Date:  2019-04-10       Impact factor: 3.857

3.  Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation.

Authors:  Leila Touat-Todeschini; Yuichi Shichino; Mathieu Dangin; Nicolas Thierry-Mieg; Benoit Gilquin; Edwige Hiriart; Ravi Sachidanandam; Emeline Lambert; Janine Brettschneider; Michael Reuter; Jan Kadlec; Ramesh Pillai; Akira Yamashita; Masayuki Yamamoto; André Verdel
Journal:  EMBO J       Date:  2017-08-01       Impact factor: 11.598

4.  Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges.

Authors:  Benedikt M Beckmann; Sander Granneman
Journal:  Methods Mol Biol       Date:  2019

Review 5.  Gene repression in S. cerevisiae-looking beyond Sir-dependent gene silencing.

Authors:  Safia Mahabub Sauty; Kholoud Shaban; Krassimir Yankulov
Journal:  Curr Genet       Date:  2020-10-10       Impact factor: 3.886

Review 6.  The functions and unique features of long intergenic non-coding RNA.

Authors:  Julia D Ransohoff; Yuning Wei; Paul A Khavari
Journal:  Nat Rev Mol Cell Biol       Date:  2017-11-15       Impact factor: 94.444

7.  KCNQ1OT1/miR-217/ZEB1 feedback loop facilitates cell migration and epithelial-mesenchymal transition in colorectal cancer.

Authors:  Yinzhu Bian; Guangyi Gao; Qun Zhang; Hanqing Qian; Lixia Yu; Ninghua Yao; Jing Qian; Baorui Liu; Xiaoping Qian
Journal:  Cancer Biol Ther       Date:  2019-02-22       Impact factor: 4.742

8.  An RNA aptamer to HP1/Swi6 facilitates heterochromatin formation at an ectopic locus in S.pombe.

Authors:  Rita Rani; Abdul Mohd Yaseen; Akshay Malwade; Aarti Sevilimedu
Journal:  RNA Biol       Date:  2019-03-19       Impact factor: 4.652

9.  LncRNAs of Saccharomyces cerevisiae bypass the cell cycle arrest imposed by ethanol stress.

Authors:  Lucas Cardoso Lázari; Ivan Rodrigo Wolf; Amanda Piveta Schnepper; Guilherme Targino Valente
Journal:  PLoS Comput Biol       Date:  2022-05-19       Impact factor: 4.779

10.  Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling.

Authors:  J David Barrass; Jane E A Reid; Yuanhua Huang; Ralph D Hector; Guido Sanguinetti; Jean D Beggs; Sander Granneman
Journal:  Genome Biol       Date:  2015-12-17       Impact factor: 13.583

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