Literature DB >> 31602614

Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges.

Benedikt M Beckmann1, Sander Granneman2.   

Abstract

RNA-binding proteins are important for core cellular processes such as mRNA transcription, splicing, transport, translation, and degradation. Recently, hundreds of novel RNA-binders have been identified in vivo in various organisms and cell types. We discuss the RNA interactome capture technique which enabled this boost in identifying new RNA-binding proteins in eukaryotes. A focus of this chapter, however, is the presentation of different challenges and problems that need to be addressed to be able to understand the conserved mRNA-bound proteomes from yeast to man.

Entities:  

Keywords:  Eukaryotes; Proteome; RNA-binding proteins; mRNA processing

Mesh:

Substances:

Year:  2019        PMID: 31602614     DOI: 10.1007/978-1-4939-9736-7_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  87 in total

Review 1.  Systematic analysis of posttranscriptional gene expression.

Authors:  Adam R Morris; Neelanjan Mukherjee; Jack D Keene
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Mar-Apr

Review 2.  The human RBPome: from genes and proteins to human disease.

Authors:  Yaseswini Neelamraju; Seyedsasan Hashemikhabir; Sarath Chandra Janga
Journal:  J Proteomics       Date:  2015-05-14       Impact factor: 4.044

Review 3.  A census of human RNA-binding proteins.

Authors:  Stefanie Gerstberger; Markus Hafner; Thomas Tuschl
Journal:  Nat Rev Genet       Date:  2014-11-04       Impact factor: 53.242

Review 4.  Deciphering the mRNP Code: RNA-Bound Determinants of Post-Transcriptional Gene Regulation.

Authors:  Niels H Gehring; Elmar Wahle; Utz Fischer
Journal:  Trends Biochem Sci       Date:  2017-03-06       Impact factor: 13.807

Review 5.  Principles and properties of eukaryotic mRNPs.

Authors:  Sarah F Mitchell; Roy Parker
Journal:  Mol Cell       Date:  2014-05-22       Impact factor: 17.970

Review 6.  Identification of RNA-protein interaction networks using PAR-CLIP.

Authors:  Manuel Ascano; Markus Hafner; Pavol Cekan; Stefanie Gerstberger; Thomas Tuschl
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-12-27       Impact factor: 9.957

7.  RNA regulation in neurologic disease and cancer.

Authors:  Robert B Darnell
Journal:  Cancer Res Treat       Date:  2010-09-30       Impact factor: 4.679

Review 8.  RNA and disease.

Authors:  Thomas A Cooper; Lili Wan; Gideon Dreyfuss
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

9.  Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system.

Authors:  Daniel J Hogan; Daniel P Riordan; André P Gerber; Daniel Herschlag; Patrick O Brown
Journal:  PLoS Biol       Date:  2008-10-28       Impact factor: 8.029

10.  iCLIP: protein-RNA interactions at nucleotide resolution.

Authors:  Ina Huppertz; Jan Attig; Andrea D'Ambrogio; Laura E Easton; Christopher R Sibley; Yoichiro Sugimoto; Mojca Tajnik; Julian König; Jernej Ule
Journal:  Methods       Date:  2013-10-25       Impact factor: 3.608

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  1 in total

1.  Post-transcriptional control of fungal cell wall synthesis.

Authors:  Rebecca A Hall; Edward W J Wallace
Journal:  Cell Surf       Date:  2022-01-12
  1 in total

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