Literature DB >> 26265067

Global Analysis of Protein Expression and Phosphorylation Levels in Nicotine-Treated Pancreatic Stellate Cells.

Joao A Paulo1, Aleksandr Gaun1, Steven P Gygi1.   

Abstract

Smoking is a risk factor in pancreatic disease; however, the biochemical mechanisms correlating smoking with pancreatic dysfunction remain poorly understood. Strategies using multiplexed isobaric tag-based mass spectrometry facilitate the study of drug-induced perturbations on biological systems. Here, we present the first large-scale analysis of the proteomic and phosphoproteomic alterations in pancreatic stellate cells following treatment with two nicotinic acetylcholine receptor (nAChR) ligands: nicotine and α-bungarotoxin. We treated cells with nicotine or α-bungarotoxin for 12 h in triplicate and compared alterations in protein expression and phosphorylation levels to mock-treated cells using a tandem mass tag (TMT9plex)-based approach. Over 8100 proteins were quantified across all nine samples, of which 46 were altered in abundance upon treatment with nicotine. Proteins with increased abundance included those associated with neurons, defense mechanisms, indicators of pancreatic disease, and lysosomal proteins. In addition, we measured differences for ∼16 000 phosphorylation sites across all nine samples using a titanium dioxide-based strategy, of which 132 sites were altered with nicotine and 451 with α-bungarotoxin treatment. Many altered phosphorylation sites were involved in nuclear function and transcriptional events. This study supports the development of future targeted investigations to establish a better understanding for the role of nicotine and associated receptors in pancreatic disease.

Entities:  

Keywords:  Fusion; SPS; Tandem mass tags; multiplexing; pancreatic cancer; pancreatitis; phosphopeptide enrichment; synchronous precursor selection

Mesh:

Substances:

Year:  2015        PMID: 26265067      PMCID: PMC4868188          DOI: 10.1021/acs.jproteome.5b00398

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  69 in total

1.  Cigarette smoking as a risk factor for chronic pancreatitis: a case-control study in Japan. Research Committee on Intractable Pancreatic Diseases.

Authors:  Y Lin; A Tamakoshi; T Hayakawa; M Ogawa; Y Ohno
Journal:  Pancreas       Date:  2000-08       Impact factor: 3.327

2.  A family of human zinc finger proteins that bind methylated DNA and repress transcription.

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Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

Review 3.  The pancreatic stellate cell: a star on the rise in pancreatic diseases.

Authors:  M Bishr Omary; Aurelia Lugea; Anson W Lowe; Stephen J Pandol
Journal:  J Clin Invest       Date:  2007-01       Impact factor: 14.808

4.  Nicotine alters the proteome of two human pancreatic duct cell lines.

Authors:  Joao A Paulo
Journal:  JOP       Date:  2014-09-28

5.  Nestin delineates pancreatic cancer stem cells in metastatic foci of NOD/Shi-scid IL2Rγ(null) (NOG) mice.

Authors:  Yoko Matsuda; Hisashi Yoshimura; Junji Ueda; Zenya Naito; Murray Korc; Toshiyuki Ishiwata
Journal:  Am J Pathol       Date:  2014-01-09       Impact factor: 4.307

Review 6.  Fibrogenesis in the pancreas.

Authors:  V Ellenrieder; W Schneiderhan; M Bachem; G Adler
Journal:  Rocz Akad Med Bialymst       Date:  2004

7.  Immortalization of pancreatic stellate cells as an in vitro model of pancreatic fibrosis: deactivation is induced by matrigel and N-acetylcysteine.

Authors:  Ralf Jesnowski; Daniel Fürst; Jörg Ringel; Ying Chen; Andrea Schrödel; Jörg Kleeff; Armin Kolb; Wolfgang D Schareck; Matthias Löhr
Journal:  Lab Invest       Date:  2005-10       Impact factor: 5.662

8.  The effects of nicotine on the alpha-7 and beta-2 nicotinic acetycholine receptor subunits in the developing piglet brainstem.

Authors:  Cherylea J Browne; Nidhi Sharma; Karen A Waters; Rita Machaalani
Journal:  Int J Dev Neurosci       Date:  2009-11-05       Impact factor: 2.457

9.  A miRNA signature of chemoresistant mesenchymal phenotype identifies novel molecular targets associated with advanced pancreatic cancer.

Authors:  Alakesh Bera; Kolaparthi VenkataSubbaRao; Muthu Saravanan Manoharan; Ping Hill; James W Freeman
Journal:  PLoS One       Date:  2014-09-03       Impact factor: 3.240

10.  Snake neurotoxin α-bungarotoxin is an antagonist at native GABA(A) receptors.

Authors:  Saad Hannan; Martin Mortensen; Trevor G Smart
Journal:  Neuropharmacology       Date:  2015-01-26       Impact factor: 5.250

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  30 in total

1.  Quantitative mass spectrometry-based multiplexing compares the abundance of 5000 S. cerevisiae proteins across 10 carbon sources.

Authors:  Joao A Paulo; Jeremy D O'Connell; Robert A Everley; Jonathon O'Brien; Micah A Gygi; Steven P Gygi
Journal:  J Proteomics       Date:  2016-07-16       Impact factor: 4.044

2.  Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3.

Authors:  José Navarrete-Perea; Qing Yu; Steven P Gygi; Joao A Paulo
Journal:  J Proteome Res       Date:  2018-05-16       Impact factor: 4.466

3.  Filter-Based Protein Digestion (FPD): A Detergent-Free and Scaffold-Based Strategy for TMT Workflows.

Authors:  Ekaterina Stepanova; Steven P Gygi; Joao A Paulo
Journal:  J Proteome Res       Date:  2018-02-13       Impact factor: 4.466

4.  A Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments.

Authors:  Joao A Paulo; Jeremy D O'Connell; Steven P Gygi
Journal:  J Am Soc Mass Spectrom       Date:  2016-07-11       Impact factor: 3.109

5.  Quantitative Phospho-proteomic Analysis of TNFα/NFκB Signaling Reveals a Role for RIPK1 Phosphorylation in Suppressing Necrotic Cell Death.

Authors:  Firaz Mohideen; Joao A Paulo; Alban Ordureau; Steve P Gygi; J Wade Harper
Journal:  Mol Cell Proteomics       Date:  2017-05-24       Impact factor: 5.911

6.  MS3-IDQ: Utilizing MS3 Spectra beyond Quantification Yields Increased Coverage of the Phosphoproteome in Isobaric Tag Experiments.

Authors:  Matthew J Berberich; Joao A Paulo; Robert A Everley
Journal:  J Proteome Res       Date:  2018-02-26       Impact factor: 4.466

7.  Deep Coverage of Global Protein Expression and Phosphorylation in Breast Tumor Cell Lines Using TMT 10-plex Isobaric Labeling.

Authors:  Fang-Ke Huang; Guoan Zhang; Kevin Lawlor; Arpi Nazarian; John Philip; Paul Tempst; Noah Dephoure; Thomas A Neubert
Journal:  J Proteome Res       Date:  2017-02-03       Impact factor: 4.466

8.  An Internal Standard for Assessing Phosphopeptide Recovery from Metal Ion/Oxide Enrichment Strategies.

Authors:  Joao A Paulo; Jose Navarrete-Perea; Alison R Erickson; Jeffrey Knott; Steven P Gygi
Journal:  J Am Soc Mass Spectrom       Date:  2018-04-18       Impact factor: 3.109

9.  Isobaric Tag-Based Protein Profiling of a Nicotine-Treated Alpha7 Nicotinic Receptor-Null Human Haploid Cell Line.

Authors:  Joao A Paulo; Steven P Gygi
Journal:  Proteomics       Date:  2018-05-15       Impact factor: 3.984

10.  Multiplexed Isobaric Tag-Based Profiling of Seven Murine Tissues Following In Vivo Nicotine Treatment Using a Minimalistic Proteomics Strategy.

Authors:  Joao A Paulo; Mark P Jedrychowski; Edward T Chouchani; Lawrence Kazak; Steven P Gygi
Journal:  Proteomics       Date:  2018-05-02       Impact factor: 3.984

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