Literature DB >> 26261956

Dipolar Nanodomains in Protein Hydration Shells.

Daniel R Martin, Dmitry V Matyushov.   

Abstract

The network of hydrogen bonds characteristic of bulk water is significantly disturbed at the protein-water interface, where local fields induce mutually frustrated dipolar domains with potentially novel structure and dynamics. Here the dipolar susceptibility of hydration shells of lysozyme is studied by molecular dynamics simulations in a broad range of temperatures, 140-300 K. The real part of the susceptibility passes through a broad maximum as a function of temperature. The maximum shifts to higher temperatures with increasing frequency of the dielectric experiment. This phenomenology is consistent with that reported for bulk relaxor ferroelectrics, where it is related to the formation of dipolar nanodomains. Nanodomains in the hydration shell extend 12-15 Å from the protein surface into the bulk. Their dynamics are significantly slower than the dynamics of bulk water. The domains dynamically freeze into a ferroelectric glass below 160 K, at which point the Arrhenius plot of the dipolar relaxation time becomes significantly steeper.

Entities:  

Keywords:  dipolar nanodomains; protein dynamics; protein hydration; relaxor ferroelectrics

Mesh:

Substances:

Year:  2015        PMID: 26261956     DOI: 10.1021/jz5025433

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  9 in total

Review 1.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

2.  Slush-like polar structures in single-crystal relaxors.

Authors:  Hiroyuki Takenaka; Ilya Grinberg; Shi Liu; Andrew M Rappe
Journal:  Nature       Date:  2017-06-14       Impact factor: 49.962

3.  The origin and impact of bound water around intrinsically disordered proteins.

Authors:  Korey M Reid; Abhishek K Singh; Chowdhury R Bikash; Jessica Wei; Yftah Tal-Gan; Nguyen Q Vinh; David M Leitner
Journal:  Biophys J       Date:  2022-01-21       Impact factor: 4.033

4.  Hydration-mediated G-protein-coupled receptor activation.

Authors:  Steven D E Fried; Kushani S K Hewage; Anna R Eitel; Andrey V Struts; Nipuna Weerasinghe; Suchithranga M D C Perera; Michael F Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-18       Impact factor: 12.779

5.  Water follows polar and nonpolar protein surface domains.

Authors:  Baofu Qiao; Felipe Jiménez-Ángeles; Trung Dac Nguyen; Monica Olvera de la Cruz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-09       Impact factor: 11.205

Review 6.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

7.  Perspective: Structure and ultrafast dynamics of biomolecular hydration shells.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Struct Dyn       Date:  2017-04-20       Impact factor: 2.920

8.  Protein Dielectrophoresis: I. Status of Experiments and an Empirical Theory.

Authors:  Ralph Hölzel; Ronald Pethig
Journal:  Micromachines (Basel)       Date:  2020-05-22       Impact factor: 2.891

9.  Dielectric ordering of water molecules arranged in a dipolar lattice.

Authors:  M A Belyanchikov; M Savinov; Z V Bedran; P Bednyakov; P Proschek; J Prokleska; V A Abalmasov; J Petzelt; E S Zhukova; V G Thomas; A Dudka; A Zhugayevych; A S Prokhorov; V B Anzin; R K Kremer; J K H Fischer; P Lunkenheimer; A Loidl; E Uykur; M Dressel; B Gorshunov
Journal:  Nat Commun       Date:  2020-08-06       Impact factor: 14.919

  9 in total

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