Literature DB >> 35074392

The origin and impact of bound water around intrinsically disordered proteins.

Korey M Reid1, Abhishek K Singh2, Chowdhury R Bikash1, Jessica Wei1, Yftah Tal-Gan1, Nguyen Q Vinh3, David M Leitner4.   

Abstract

Proteins and water couple dynamically over a wide range of time scales. Motivated by their central role in protein function, protein-water dynamics and thermodynamics have been extensively studied for structured proteins, where correspondence to structural features has been made. However, properties controlling intrinsically disordered protein (IDP)-water dynamics are not yet known. We report results of megahertz-to-terahertz dielectric spectroscopy and molecular dynamics simulations of a group of IDPs with varying charge content along with structured proteins of similar size. Hydration water around IDPs is found to exhibit more heterogeneous rotational and translational dynamics compared with water around structured proteins of similar size, yielding on average more restricted dynamics around individual residues of IDPs, charged or neutral, compared with structured proteins. The on-average slower water dynamics is found to arise from excess tightly bound water in the first hydration layer, which is related to greater exposure to charged groups. The more tightly bound water to IDPs correlates with the smaller hydration shell found experimentally, and affects entropy associated with protein-water interactions, the contribution of which we estimate based on the dielectric measurements and simulations. Water-IDP dynamic coupling at terahertz frequencies is characterized by the dielectric measurements and simulations.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35074392      PMCID: PMC8874019          DOI: 10.1016/j.bpj.2022.01.011

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  65 in total

1.  New terahertz dielectric spectroscopy for the study of aqueous solutions.

Authors:  Deepu K George; Ali Charkhesht; N Q Vinh
Journal:  Rev Sci Instrum       Date:  2015-12       Impact factor: 1.523

2.  Dielectric relaxation spectroscopy of lysozyme aqueous solutions: analysis of the δ-dispersion and the contribution of the hydration water.

Authors:  C Cametti; S Marchetti; C M C Gambi; G Onori
Journal:  J Phys Chem B       Date:  2011-05-10       Impact factor: 2.991

3.  High-precision gigahertz-to-terahertz spectroscopy of aqueous salt solutions as a probe of the femtosecond-to-picosecond dynamics of liquid water.

Authors:  N Q Vinh; Mark S Sherwin; S James Allen; D K George; A J Rahmani; Kevin W Plaxco
Journal:  J Chem Phys       Date:  2015-04-28       Impact factor: 3.488

4.  The Dynamism of Intrinsically Disordered Proteins: Binding-Induced Folding, Amyloid Formation, and Phase Separation.

Authors:  Samrat Mukhopadhyay
Journal:  J Phys Chem B       Date:  2020-10-27       Impact factor: 2.991

5.  Thermodynamic properties of oxygen equilibria of dimeric and tetrameric hemoglobins from Scapharca inaequivalvis.

Authors:  M Ikeda-Saito; T Yonetani; E Chiancone; F Ascoli; D Verzili; E Antonini
Journal:  J Mol Biol       Date:  1983-11-15       Impact factor: 5.469

6.  Kinetic Selection and Relaxation of the Intrinsically Disordered Region of a Protein upon Binding.

Authors:  Duy Phuoc Tran; Akio Kitao
Journal:  J Chem Theory Comput       Date:  2020-04-01       Impact factor: 6.006

7.  Diffusion of Hydration Water around Intrinsically Disordered Proteins.

Authors:  Pooja Rani; Parbati Biswas
Journal:  J Phys Chem B       Date:  2015-10-08       Impact factor: 2.991

8.  Solvation dynamics of biomolecules: modeling and terahertz experiments.

Authors:  David M Leitner; Martin Gruebele; Martina Havenith
Journal:  HFSP J       Date:  2008-09-15

Review 9.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

10.  Intrinsically disordered proteins and structured proteins with intrinsically disordered regions have different functional roles in the cell.

Authors:  Antonio Deiana; Sergio Forcelloni; Alessandro Porrello; Andrea Giansanti
Journal:  PLoS One       Date:  2019-08-19       Impact factor: 3.240

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  1 in total

1.  Probing Adaptation of Hydration and Protein Dynamics to Temperature.

Authors:  Luan C Doan; Jayangika N Dahanayake; Katie R Mitchell-Koch; Abhishek K Singh; Nguyen Q Vinh
Journal:  ACS Omega       Date:  2022-06-13
  1 in total

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