Literature DB >> 26261318

A DEMETER-like DNA demethylase governs tomato fruit ripening.

Ruie Liu1, Alexandre How-Kit2, Linda Stammitti1, Emeline Teyssier1, Dominique Rolin1, Anne Mortain-Bertrand1, Stefanie Halle1, Mingchun Liu3, Junhua Kong4, Chaoqun Wu4, Charlotte Degraeve-Guibault1, Natalie H Chapman5, Mickael Maucourt1, T Charlie Hodgman5, Jörg Tost6, Mondher Bouzayen3, Yiguo Hong7, Graham B Seymour5, James J Giovannoni8, Philippe Gallusci9.   

Abstract

In plants, genomic DNA methylation which contributes to development and stress responses can be actively removed by DEMETER-like DNA demethylases (DMLs). Indeed, in Arabidopsis DMLs are important for maternal imprinting and endosperm demethylation, but only a few studies demonstrate the developmental roles of active DNA demethylation conclusively in this plant. Here, we show a direct cause and effect relationship between active DNA demethylation mainly mediated by the tomato DML, SlDML2, and fruit ripening- an important developmental process unique to plants. RNAi SlDML2 knockdown results in ripening inhibition via hypermethylation and repression of the expression of genes encoding ripening transcription factors and rate-limiting enzymes of key biochemical processes such as carotenoid synthesis. Our data demonstrate that active DNA demethylation is central to the control of ripening in tomato.

Entities:  

Keywords:  DNA glycosylase lyase; active DNA demethylation; epigenetic; fruit ripening; tomato

Mesh:

Substances:

Year:  2015        PMID: 26261318      PMCID: PMC4553810          DOI: 10.1073/pnas.1503362112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

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Journal:  Plant Mol Biol       Date:  2000-06       Impact factor: 4.076

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Journal:  Plant Cell       Date:  2004-03-09       Impact factor: 11.277

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Journal:  Plant Mol Biol       Date:  1992-06       Impact factor: 4.076

Review 4.  DNA cytosine methylation in plant development.

Authors:  Meishan Zhang; Josphert N Kimatu; Kezhang Xu; Bao Liu
Journal:  J Genet Genomics       Date:  2010-01       Impact factor: 4.275

5.  Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants.

Authors:  Alexandre How-Kit; Antoine Daunay; Nicolas Mazaleyrat; Florence Busato; Christian Daviaud; Emeline Teyssier; Jean-François Deleuze; Philippe Gallusci; Jörg Tost
Journal:  Plant Mol Biol       Date:  2015-06-14       Impact factor: 4.076

6.  A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus.

Authors:  Julia Vrebalov; Diane Ruezinsky; Veeraragavan Padmanabhan; Ruth White; Diana Medrano; Rachel Drake; Wolfgang Schuch; Jim Giovannoni
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

7.  A tomato gene expressed during fruit ripening encodes an enzyme of the carotenoid biosynthesis pathway.

Authors:  G E Bartley; P V Viitanen; K O Bacot; P A Scolnik
Journal:  J Biol Chem       Date:  1992-03-15       Impact factor: 5.157

8.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

9.  DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.

Authors:  Yeonhee Choi; Mary Gehring; Lianna Johnson; Mike Hannon; John J Harada; Robert B Goldberg; Steven E Jacobsen; Robert L Fischer
Journal:  Cell       Date:  2002-07-12       Impact factor: 41.582

10.  Genome-wide demethylation of Arabidopsis endosperm.

Authors:  Tzung-Fu Hsieh; Christian A Ibarra; Pedro Silva; Assaf Zemach; Leor Eshed-Williams; Robert L Fischer; Daniel Zilberman
Journal:  Science       Date:  2009-06-12       Impact factor: 47.728

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2.  Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit.

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4.  Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation.

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Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

6.  Global increase in DNA methylation during orange fruit development and ripening.

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-11       Impact factor: 11.205

7.  Timing and Order of the Molecular Events Marking the Onset of Berry Ripening in Grapevine.

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Journal:  Plant Physiol       Date:  2018-09-17       Impact factor: 8.340

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Authors:  Till Bey; Suraj Jamge; Sonja Klemme; Dorota Natalia Komar; Sabine Le Gall; Pawel Mikulski; Martin Schmidt; Johan Zicola; Alexandre Berr
Journal:  Epigenetics       Date:  2016-05-16       Impact factor: 4.528

10.  Allelic Mutations in the Ripening -Inhibitor Locus Generate Extensive Variation in Tomato Ripening.

Authors:  Yasuhiro Ito; Yasuyo Sekiyama; Hiroko Nakayama; Ayako Nishizawa-Yokoi; Masaki Endo; Yoko Shima; Nobutaka Nakamura; Eiichi Kotake-Nara; Susumu Kawasaki; Sakiko Hirose; Seiichi Toki
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